FMO11839.5prime Sequence
897 bp (883 high quality bases) assembled on 2012-06-25
> FMO11839.5prime
CGCCTCCCCCATTGAGTTCGTAATGGACACCAGCCTAAATGGCTCTCGAT
CTGATCCTGCGACTGCAACCCACCCTGGCAAATGGCCACCGACGACCAAA
GCGCCGGCGCTCAGGGCTCCAGCTGGAACAGCTGGACATGCTTATCAGTC
GCCATCGTCGTCGCTGGCCGCTGATAACAGAAGCCACGACAACAACAACG
CTAGCGCCGTGTCCATGCTGCTGCCGCAAGACGGCGACGCATCTGGAGCT
GTGGCCCCTGCTGTTACTCCCCAGCTGCCCATCTACATTGCTCAGCCTAG
CGCGAAAAAGCCAGAAAACAAGATAAAATGCCACTGTGACACGTGCAAGG
AATCGAACAATATATGTGAAACGGACGGCTTTTGTTTCACGTCCGTGGAG
AAGAACTCTGATGGGAGCATCATCTTCAGCTACAGATGCATAACAGACCA
GTTGCCACCTGAAGATCCTACCTCGTGCAAGTTAAATTCGGAAGCGGGCT
CTTCTCAGTGCTGCGCCGAAGATTTTTGCAATACGCGTGAGAATTACAGT
GGTGTCCTACCAGATTATGTGCCACACCGACTGACCAGCTGGGAGTTTGT
GGCTATCATCCTAGGGGCCACCCTCTTCATTTGCTTCACGGGCACCAGTA
CGTGGTATTATTGCCAGCGTCGCAAGCGAATGGCTAGCGGAAGGACGTTT
GCCAAGGAGGATTCGGCGTACGATCCTATTTTGAATGGTAATACAACCAT
ACACGACATCATTGAGATGACCACCTCTGGTTCGGGTTTCGGCTGTTCTT
CCGCTGCTTGGTGCAGCGTTCCATTGCCCGACAGGTGCAGCTGTTGCCAC
GTTATTCGGAAAGGGACGTTTCGGCGAGGTCCTGCCGTGACGCCTGC
FMO11839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| babo-RC | 4758 | CG8224-RC | 690..1566 | 1..881 | 4290 | 99.4 | Plus |
| babo-RA | 4776 | CG8224-RA | 690..1130 | 1..441 | 2190 | 99.8 | Plus |
| babo-RB | 4839 | CG8224-RB | 690..1127 | 1..438 | 2190 | 100 | Plus |
| babo-RA | 4776 | CG8224-RA | 1268..1584 | 561..881 | 1490 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8953102..8953417 | 2..317 | 1580 | 100 | Plus |
| 2R | 25286936 | 2R | 8959103..8959331 | 560..788 | 1145 | 100 | Plus |
| 2R | 25286936 | 2R | 8957027..8957156 | 434..563 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 8954734..8954851 | 318..435 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 8959394..8959485 | 787..881 | 295 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:17:28 has no hits.
FMO11839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:20 Download gff for
FMO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 688..1578 | 1..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:09 Download gff for
FMO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 690..1580 | 1..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:34 Download gff for
FMO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| babo-RC | 690..1580 | 1..897 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:34 Download gff for
FMO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8953100..8953417 | 1..317 | 99 | -> | Plus |
| 2R | 8954734..8954851 | 318..435 | 100 | -> | Plus |
| 2R | 8957029..8957156 | 436..563 | 100 | -> | Plus |
| 2R | 8959107..8959334 | 564..792 | 99 | -> | Plus |
| 2R | 8959400..8959499 | 793..897 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:09 Download gff for
FMO11839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4840605..4840922 | 1..317 | 99 | -> | Plus |
| arm_2R | 4842239..4842356 | 318..435 | 100 | -> | Plus |
| arm_2R | 4844534..4844661 | 436..563 | 100 | -> | Plus |
| arm_2R | 4846612..4846839 | 564..792 | 99 | -> | Plus |
| arm_2R | 4846905..4847004 | 793..897 | 91 | | Plus |
