FMO11840.5prime Sequence
845 bp (798 high quality bases) assembled on 2012-06-25
> FMO11840.5prime
CGAGCTGGCAGAGTGCTTTCTGGGCCTCACCAAGTGCGACGACACAAACG
TGCGCAAGGAGGCGGCCAAGTGCATTGCGGAGATCACCAAGTCCGAGGTG
CAGCGCAAGAAGTTCACCAAGAGGAATATAATAGCCGCATTTCTGGAGTG
CTTGCGACAAGTGCCCACGTCCGACGGCAGTATGGAGCTGCCCATACAGA
TTTGTCGGGCACTGGGCAATATCTGCTACCTAAACGACGAAGCCAGGGAC
TTAATACTCGAGCTGGAGGGCGATGCTGTTCTACTGCGACTGCTGGACAT
CACAACCATCGAGGACGTGGCCAATGCGGCGCAATTCATCAAAGTGCGCG
GCGGCTTGCTGTCCAACTATTTGCTCGGAGGCGAGGGCTTGGCCAAGCGG
GCCATGGAGTTGGGCGTGATGAAGAAGCTGCAAGGCATCATCGACATTGG
CGCCTCCAATGTGGAACAGCATGAGGATCTGCTGCTGAACACGCTTCCAC
TGCTCAGTATACTCACCGAGAACGTGTCGGATCTGAACTTCGACTCTTCC
CTGAATATCCAGCTGTCTCGCATTCTGGCCGCTTCACGAATCCCGATCTT
GCCGAGATGTGCCTGGAGCTGCTCCATTACCAGGCGGAGAGCGACGAAGT
CAAGCTTATTTGGCCAAGACGGTCTGTGCGAACCATCTACAACCTGCTGA
AGTACAGACTCTGGCCAGCACAAGTGAGGCCAGGCGTTGATGAAACCTCG
CTGCGAACTCATCGATTATCCTTACTGGTGATGACTCATGCACTATTGTA
CACCACGCCGCTGCTGAGACCATGGTCGATTGTCTGGACTCGACG
FMO11840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RB | 3467 | CG3572-RB | 417..1275 | 1..845 | 3890 | 97.9 | Plus |
| vimar-RC | 3470 | CG3572-RC | 420..1278 | 1..845 | 3890 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6977710..6978482 | 764..1 | 3425 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:17:31 has no hits.
FMO11840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:21 Download gff for
FMO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RB | 414..1272 | 1..845 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:12 Download gff for
FMO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 420..1278 | 1..845 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:36 Download gff for
FMO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 420..1278 | 1..845 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:36 Download gff for
FMO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6977535..6977602 | 781..845 | 92 | <- | Minus |
| 2R | 6977692..6978482 | 1..780 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:12 Download gff for
FMO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2865040..2865107 | 781..845 | 92 | <- | Minus |
| arm_2R | 2865197..2865987 | 1..780 | 98 | | Minus |
