Clone FMO11842 Report

Search the DGRC for FMO11842

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42784-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11842.5prime Sequence

1079 bp (979 high quality bases) assembled on 2012-06-25

> FMO11842.5prime
TGGCCGGCCGATCTCCTCGAAAAGTGCGCCCAAGGACGTGCCGCCTGGTT
GGAGCGGGGTCGACGCTGCAGCGTCCAGGATCAGCAACAGCAGCAGGCCA
CCTGCCACCGACGCTGGGTGAAGCGCAACCGAATCCAAGACGCCTCTTTG
GGCGGCTCATCGGACGATGAGGATTTCCTGGGCGTTCTGCGGGGTCCTAG
CACCTTTGCGAATGCCTTTCTCTACGTGGGCCTGGGCACGGTGGCACTGG
GACTCGTCATCGCGTTCGTTGGCACCGGCGAGAAGGGCTTCAAAACCACG
GAACTAAGACTTATAGGCCCCTCTCTCATAGGATTGGGCCTGATCTGTTG
CATTTTACGCATCCTCTTCTGCATCTGTCCATCGCACTGCATTTCATCTA
GCAAAAAGACGCGGAAGAAAAACGGCAACAAGATTGATGCAGATCACACG
ACATCGTTGCTCAGAAACGAGAGCAAAAGAGTATCTATAGCGAGAGGTCC
TAGTTTTCAGCCCAAATATCCCATAGCGCACAAACGCAGCCAGAGCAAAA
TGCTCAACGAGGGAATGGAGGCACTGCGTCAGATAGCCACCACATCCTTG
TTCATGCAGAACGAGCAGAAGACGGCCATCAATCGCGTGGTGCCGATCAT
CAATGAGCCCGGAAAGCGGTGATGCTCCACTGGAGATGAAGAAGCTGCAG
ACGGCTCTGAATGCCTGCGAGATGAGTGACGATGAGCAGGATCAGGACCA
GGATCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGATTGCCAACGTAC
ACAGCCACAACTGCCGTTACGAGTAGTACCACCAAAGACCAACATCAACA
GCAGCCACATCGAGGATAACGAGAGCACTACCCTGAGCACGTTTGACGAA
AAGCCGGACAGCAAGCTGGTGCGTCAGCGGGTGGCACTGCACAACAACGC
TAACAGCAACAGCAGCAGCAGCAGCAGATCAGCACATGTTACGAAGTCGC
AGTCATTGTCCTCCTTCTTCCGGTCAGATTCCTTGGAGGTTGTTGAAGGA
GACTTCCCTGAATGATGCAGCAACGAAAC

FMO11842.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42784-RC 3621 CG42784-RC 483..1567 1..1076 4910 97.5 Plus
CG42784-RF 6640 CG42784-RF 3524..4586 23..1076 4800 97.5 Plus
CG42784-RI 5345 CG42784-RI 2230..3291 24..1076 4795 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13497958..13498309 671..1015 1335 96.6 Plus
2L 23513712 2L 13497239..13497438 133..332 1000 100 Plus
2L 23513712 2L 13497500..13497680 330..510 905 100 Plus
2L 23513712 2L 13497739..13497900 509..671 765 99.4 Plus
2L 23513712 2L 13496567..13496698 1..132 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:17:37 has no hits.

FMO11842.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:22 Download gff for FMO11842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42784-RC 483..1522 1..1031 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:16 Download gff for FMO11842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42784-RC 483..1522 1..1031 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:40 Download gff for FMO11842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42784-RC 483..1522 1..1031 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:40 Download gff for FMO11842.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13497741..13497900 511..671 99 -> Plus
2L 13496567..13496698 1..132 100 -> Plus
2L 13497239..13497437 133..331 100 -> Plus
2L 13497502..13497680 332..510 100 -> Plus
2L 13497959..13498328 672..1031 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:16 Download gff for FMO11842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13496567..13496698 1..132 100 -> Plus
arm_2L 13497239..13497437 133..331 100 -> Plus
arm_2L 13497502..13497680 332..510 100 -> Plus
arm_2L 13497741..13497900 511..671 99 -> Plus
arm_2L 13497959..13498328 672..1031 95   Plus