FMO11843.5prime Sequence
1141 bp (962 high quality bases) assembled on 2012-06-25
> FMO11843.5prime
CGCAAGAAGGCCAAGTTGGCCGCCCTGCGCGAGGAGAAGGATCGCCGGCG
TCGCGAGAAGGAGATCAAGGACATGGAGGAGGCGGCCGGTCGCATTGGCG
GCGGAGCAGGCATCGACAAGGATCAGCGCAAGGATCTCGACGAAATGCTG
TCATCGCTGGGCGTGGCCCCCGTCTCCGAGGTCCTTTCCTCACTCTCCTC
CGTCAACTCGATGACTTCGGACAACTCGAACACACAGACCCCCGACGCCA
GCCTCCAAGCCACTGTCAATGGCCAGAGCGGCGGAAAGAAACAGCCCCTC
AACCTAAGCGTCTACAATGTGCAGGCTACGAACATTCCACCAAAAGAGAC
ACTGGTCTACACAAAGCAGACCCAGACGACCAGTACCGGAGGCGGAAACG
GCGATGGATATATGGAGGACTGGTGGCGTCCACGTAAAGCTCATGCTACG
GATTATTATGATGAATACAATCTTAATCCGGGTTTAGAGTGGGAGGATGA
ATTCACAGACGACGAAGAGAGCTCACTGCAGAACCTGGGCAACGGATTCA
CCTCCAAGCTGCCACCGGGCTATCTCACCCACGGCCTGCCCACCGTTAAG
GACGTCGCCCCGGCCATCACACCACTCGAGATCAAGAAGGAGACTGAAGT
GAAGAAGGAGGTCAACGAGCTGTCCGAGGAGCAGAAGCAGATGATCATAC
TGTCGGAGAACTTCCAGCGGGTTCGTGGTGCGTGCCCGGCCGCGTCATCG
AACGGGCCCCTCTCGGAGAATGTGGACATATACACGGACTACATCGGCGG
CGGCGACAGCGAGGAGGCGAACGACGAGCGATCGCATGCGCGGCTCTCGC
TGACCCGCGTCTTCTACGAACGAGCGCTGGTCGAAAACCGCTGCATCACC
AGTATGGGACTGGTCCACCCCACTTCCCCGAGCTGGTGGTGGGGCTCGTA
CCTCAACACGAAGGAAGAGTCCGAAACGAAGCCGGACGGGCGTGGGTGAT
GGTGTTGGTAACACCAAGTTCAAGAAAGAGCACGCCCGAAGAACGTCTTC
ACCTGGCAGAGCGCGGGTGATGTCACCTGCCTTGGCCAAGTTTCAATCCA
ACCTGAATCTCGGCGGACCCTTATTTCGGCCAAATTGGCTG
FMO11843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sw-RK | 2756 | CG18000-RK | 224..1343 | 1..1137 | 4855 | 96.5 | Plus |
| sw-RJ | 2786 | CG18000-RJ | 659..1373 | 406..1137 | 2830 | 94.6 | Plus |
| sw-RE | 3070 | CG18000-RE | 813..1494 | 439..1137 | 2665 | 94.3 | Plus |
| sw-RJ | 2786 | CG18000-RJ | 224..629 | 1..406 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20183243..20183682 | 1116..661 | 1080 | 90.6 | Minus |
| X | 23542271 | X | 20221750..20222189 | 1116..661 | 1080 | 90.6 | Minus |
| X | 23542271 | X | 20229624..20230063 | 1116..661 | 1080 | 90.6 | Minus |
| X | 23542271 | X | 20175416..20175855 | 1116..661 | 1065 | 90.4 | Minus |
| X | 23542271 | X | 20190967..20191406 | 1116..661 | 1065 | 90.4 | Minus |
| X | 23542271 | X | 20198683..20199122 | 1116..661 | 1065 | 90.4 | Minus |
| X | 23542271 | X | 20206407..20206846 | 1116..661 | 1065 | 90.4 | Minus |
| X | 23542271 | X | 20214068..20214507 | 1116..661 | 1065 | 90.4 | Minus |
| X | 23542271 | X | 20176238..20176392 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20184060..20184214 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20191789..20191943 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20199505..20199659 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20207229..20207383 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20214885..20215039 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20222567..20222721 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20230441..20230595 | 661..507 | 775 | 100 | Minus |
| X | 23542271 | X | 20235288..20235434 | 278..132 | 735 | 100 | Minus |
| X | 23542271 | X | 20235508..20235639 | 132..1 | 660 | 100 | Minus |
| X | 23542271 | X | 20234774..20234904 | 407..277 | 655 | 100 | Minus |
| X | 23542271 | X | 20178269..20178399 | 407..277 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20186144..20186274 | 407..277 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20193874..20194004 | 407..277 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20201590..20201720 | 407..277 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20209260..20209390 | 407..277 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20216916..20217046 | 407..277 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20224651..20224781 | 407..277 | 640 | 99.2 | Minus |
| X | 23542271 | X | 20232117..20232165 | 508..460 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:17:41 has no hits.
FMO11843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:23 Download gff for
FMO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 408..1345 | 1..943 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:19 Download gff for
FMO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 224..1161 | 1..943 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:42 Download gff for
FMO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sw-RK | 224..1161 | 1..943 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:42 Download gff for
FMO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20229786..20230062 | 662..943 | 96 | <- | Minus |
| X | 20230441..20230593 | 509..661 | 100 | <- | Minus |
| X | 20232117..20232164 | 461..508 | 100 | <- | Minus |
| X | 20233423..20233443 | 440..460 | 100 | <- | Minus |
| X | 20234328..20234360 | 407..439 | 100 | <- | Minus |
| X | 20234775..20234902 | 279..406 | 100 | <- | Minus |
| X | 20235288..20235434 | 132..278 | 100 | <- | Minus |
| X | 20235509..20235639 | 1..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:19 Download gff for
FMO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20100860..20101136 | 662..943 | 96 | <- | Minus |
| arm_X | 20101515..20101667 | 509..661 | 100 | <- | Minus |
| arm_X | 20103191..20103238 | 461..508 | 100 | <- | Minus |
| arm_X | 20104497..20104517 | 440..460 | 100 | <- | Minus |
| arm_X | 20105402..20105434 | 407..439 | 100 | <- | Minus |
| arm_X | 20105849..20105976 | 279..406 | 100 | <- | Minus |
| arm_X | 20106362..20106508 | 132..278 | 100 | <- | Minus |
| arm_X | 20106583..20106713 | 1..131 | 100 | | Minus |
