FMO11845.5prime Sequence
706 bp (706 high quality bases) assembled on 2012-06-25
> FMO11845.5prime
GAATTACCTTGGACCATGAACTCCTCCAGCGGCGATGACGAGGCGCCGAA
GGATCCGCGCACTGGCGGCGAGGATTTTACGCAACAATTTACAGAGAATG
ATTTCGAGGGACATCGGGCCCACACCGTTTATGTGGGCGTCCATGTGCCA
GGAGGACGACGCCACTCGCAGCGCCGCCGCAAGCATCACCACAGTGGCCC
CGGAGGTGGTGGCGGTGGCGGAGGTGGAGGCGGCTCCATCGGCGGATCCG
GAAGTGTGGGCGGTGGTGCGGGCAAGGACAACGTCAGCGAGAAGCAACAG
GAAGTGGAGCGACCAGTGACTCCGCCGGCACAGCGAGTTCAATTCATACT
TGGCGAGGATGTGGACGATGGCACACACGTATCGCATCCCCTGTTTTCGG
AAATGGGGATGCTGGTCAAGGAGGGCGACGAGATCGAGTGGAAGGAGACA
GCGCGATGGATCAAATTCGAGGAGGATGTGGAGGAGGGTGGCAATCGATG
GTCGAAGCCGCACGTGGCCACGCTCTCCCTGCACTCCCCTGTTCGAGCTG
CGTCGCCTGCTGGTCAATGGCAGCGTGATGCTGGACATGGAGGCCCAAAA
TCTGGAGGTGATGGCCGATCTCGTGTGCGATCACATGGTCAGTGCGGGAA
CATTGCCGCCCGGTGTAAAGGATAAGGTCAAGGACGCGCTCCTGCGACGA
CATCGG
FMO11845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndae1-RI | 4127 | CG42253-RI | 318..1022 | 1..706 | 3505 | 99.9 | Plus |
| Ndae1-RC | 4517 | CG31906-RA | 318..1022 | 1..706 | 3505 | 99.9 | Plus |
| Ndae1-RB | 4046 | CG42253-RB | 318..1022 | 1..706 | 3505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7234609..7234999 | 706..315 | 1910 | 99.7 | Minus |
| 2L | 23513712 | 2L | 7236145..7236352 | 316..109 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 7237686..7237790 | 110..6 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:17:45 has no hits.
FMO11845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:23 Download gff for
FMO11845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RC | 315..1019 | 1..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:21 Download gff for
FMO11845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RB | 318..1022 | 1..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:44 Download gff for
FMO11845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RB | 318..1022 | 1..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:44 Download gff for
FMO11845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7234609..7234997 | 317..706 | 99 | <- | Minus |
| 2L | 7236145..7236351 | 110..316 | 100 | <- | Minus |
| 2L | 7237687..7237791 | 1..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:21 Download gff for
FMO11845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7234609..7234997 | 317..706 | 99 | <- | Minus |
| arm_2L | 7236145..7236351 | 110..316 | 100 | <- | Minus |
| arm_2L | 7237687..7237791 | 1..109 | 96 | | Minus |
