FMO11848.5prime Sequence
1105 bp (1044 high quality bases) assembled on 2012-06-25
> FMO11848.5prime
CAGTCGACATGACCAGGGAGTTGATGCAAAAGTATCCGGAATATTCACGA
CGCAAATTCGGACCATTCAGACAGCTGGTGCACCAAGCATTCTCGATCAT
TTCGGAAAGCTATAACTTGGACAAGGTAAGCAGTTCCGAGGAAGATTGTG
TTAGCGAGGACTCCGAGCCACCACCCACGAATAGTGTGATGAACAATATG
ATGAACAGCCTGTATAGTCAACCAAGAAAGCCGCTGGCGCCCAAGCCAAT
CAGCGAGCCCATCGATATATCCAGTGGAGACGAGAACGAAGATGACTCCA
ATACAAAAACCACCAACGGAGATGGGGTAGCTGCTGCTGCTGCTCCTCCT
CCTCCTACTCCAGCAGTGCAGGGCAGTGCTTTGAAACGCCTGATGGAGGA
AGTGCCGGAGATCGCAGTGGCTGCAAAGAAAGTAGCTAAACCGAATACTA
TTCACGTTAGCAGTTCGGAGGCCATTCAAAAGCTGCACCAAGTTGTGGGC
AACAGAGCGAAAAATCTTTCAGAGGACGCCGTTCCGCGTTCCAAAGATCA
CCGTAATGTGCCTGGCTTATATCAGCAGTTGCACCAAAACCAAAGTCGCG
ATCGCCTTCGGAAGTTCAAAAGGGATCTGGAGGTGCAGCACCCAACGGAA
AGTTTCCGGGACATTGGTGGCATGGATAGCACTCTTAAGGAGTTGTGTGA
AATGCTGATCCATATTAAGTCGCCGGAGTTCTACTTTCAATTGGGTCTAT
TGCCTTCGAGAGGTTTATTGCTTCATGGGCCGCCAGGCTGTGGCAAAACC
TTTCTTGCTCGTGCCATTAGCGGGCAACTAAAAATGCCTCTAATGAAATT
CCCGGCCACAGAGCTAATTGGTGGCATCTCTGGTGAGTCGGAGACGGATT
CGCGAGGTCTTTGACCAGGCCATTGGCTACTCGCCTTGTGTGCTTTTCAT
CGGATGAAATCGACGCCATCGGAGAAATCGGTCAGTGGGCGTCCAGATAT
GGAACGTCGCATTGTCTCGCAGCTGATAAGCAGTCTGACACCTGAGCCAA
CGAGTTTGTCAATCAGTATTCGTCATAGCGGCCACCACCGTCCGATTGTC
CTCGA
FMO11848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smid-RI | 3080 | CG8571-RI | 119..1224 | 9..1105 | 5115 | 98.3 | Plus |
| smid-RG | 3313 | CG8571-RG | 352..1457 | 9..1105 | 5115 | 98.3 | Plus |
| smid-RA | 3170 | CG8571-RA | 209..1314 | 9..1105 | 5115 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7382385..7382731 | 86..432 | 1735 | 100 | Plus |
| 3L | 28110227 | 3L | 7382894..7383234 | 484..824 | 1705 | 100 | Plus |
| 3L | 28110227 | 3L | 7383300..7383572 | 824..1088 | 830 | 92 | Plus |
| 3L | 28110227 | 3L | 7382256..7382334 | 9..87 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 7382783..7382835 | 431..483 | 265 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 6171..6229 | 758..816 | 115 | 66.1 | Plus |
FMO11848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:18 Download gff for
FMO11848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smid-RA | 205..1309 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:03 Download gff for
FMO11848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smid-RA | 209..1313 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:27 Download gff for
FMO11848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smid-RA | 209..1313 | 9..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:27 Download gff for
FMO11848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7382256..7382334 | 9..87 | 100 | -> | Plus |
| 3L | 7382387..7382731 | 88..432 | 100 | -> | Plus |
| 3L | 7382785..7382835 | 433..483 | 100 | -> | Plus |
| 3L | 7382894..7383234 | 484..824 | 100 | -> | Plus |
| 3L | 7383301..7383589 | 825..1104 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:03 Download gff for
FMO11848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7375356..7375434 | 9..87 | 100 | -> | Plus |
| arm_3L | 7375487..7375831 | 88..432 | 100 | -> | Plus |
| arm_3L | 7375885..7375935 | 433..483 | 100 | -> | Plus |
| arm_3L | 7375994..7376334 | 484..824 | 100 | -> | Plus |
| arm_3L | 7376401..7376689 | 825..1104 | 93 | | Plus |
