FMO11850.5prime Sequence
1112 bp (990 high quality bases) assembled on 2012-06-25
> FMO11850.5prime
CAGTCGACATGTATCCCTGGAGCTCCTCCTCGTACGGCGGCCAGATTCCC
AGTGCCGCCAACGTCCGGACCATGCCGAATGGTTTGGATGACCAGGAGAA
GCTGCTCGCTGAAGCCATTGGACTAGCGAGGAAGCAGGCCTTTCAAATGA
ACCACTTTCTGGATAAGGAGCGTATGCTGGACTCGCTCAAGTGCGCCAGC
ACCATGCTGGGCGAGCTGCGGACCTCCGTCCTTTCCCCCAAAAGTTACTA
CGAGCTGTACATGGCCGTCACCAACGAACTGTGCCACCTGGAGCTGTACC
TCAGCGAGAAAATCGACAAGAAAACGGATTTGTACGAGCTCGTTCAGTAC
TCGCATACTATTGTGCCGCGGTTGTACCTCCTCATAACAGTGGGCATTGT
GTATATCAAGAATGACCCTACGCTGAAGCGCAGCATTCTAAAGGACCTGG
TCGAGATGTGCCGCGGTGTCCAGCATCCGTTGCGAGGCCTCTTTCTGCGC
AACTACCTGCTGCAGTGCACCCGGAACATCCTGCCCGATGTGATGGTTGA
GGAGAACGAGCACGAGGGCAATGTCTATGATGCCATCGACTTCGTGCTGA
CCAACTTTGCCGAGATGAACAAGCTGTGGGTCCGCATGCAGCACCAGGGA
CACTCCAGCGAAAAGACGCGTCGCGAGAAGGAGCGTGAGGAACTAAAGAT
CCTGGTAGCACTAATCTGGTGCGGTTGTCCCAGCTGGAGTCGGCCACTCT
GGAAATCTACCAGCGACTCATTCTACCCGGCATCCTGAGCAGGTGGTCAG
CTGTCGCGATGCAATTGCACAGGAGTACCTAATGGAGTGCATCATCCAGG
TGTTCCCCGACGAGTTCCACCTAAAGACACTTGACCCCTTCCTAAAGTCC
TGCGCTCAGCTGGAGACCGGTGTTAATGTGAGACATCATAATATCGTAAT
CGAACGATTGGCTGCCTTATACCAGCGAAGTGCCAGGACAAGTGTAATGC
ATCGATGCCATCTAACCCGCCGAGGTGGACTTGTTGGAGTTTCAGTGTCA
GTGGCTACTTCGTGCAACCGATGAACTGCGTGAGAACCCATTCGCTGCAG
TGCCTGCTGACC
FMO11850.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps35-RB | 3369 | CG5625-RB | 289..1359 | 8..1066 | 4900 | 97.9 | Plus |
| Vps35-RA | 3015 | CG5625-RA | 123..1133 | 68..1066 | 4600 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22186768..22187496 | 259..982 | 3370 | 98.8 | Plus |
| 2R | 25286936 | 2R | 22186516..22186706 | 68..258 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 22186260..22186320 | 8..68 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:17:59 has no hits.
FMO11850.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:26 Download gff for
FMO11850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RB | 277..1333 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:30 Download gff for
FMO11850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RB | 283..1339 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:52 Download gff for
FMO11850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RB | 283..1339 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:52 Download gff for
FMO11850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22186254..22186320 | 1..68 | 95 | -> | Plus |
| 2R | 22186517..22186706 | 69..258 | 100 | -> | Plus |
| 2R | 22186768..22187501 | 259..987 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:30 Download gff for
FMO11850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18073759..18073825 | 1..68 | 95 | -> | Plus |
| arm_2R | 18074022..18074211 | 69..258 | 100 | -> | Plus |
| arm_2R | 18074273..18075006 | 259..987 | 98 | -> | Plus |
