FMO11851.5prime Sequence
1125 bp (1019 high quality bases) assembled on 2012-06-25
> FMO11851.5prime
CAGTCGACATGAGTTTTCTGGATGACAATAATGCCTGTGGGCAGAATCTG
CTGAATATAGTGTCGGTGGGTAATTCTATAATAGCAGAGATCCTGCGCCT
CAAGGACTACGTGCCCAGTATTTATAGATTGGACAACAAAGCTGATAAGG
CGAAATATGGCGAGCTTATTCTGGATTTCAGCTACTTCAAGATAGCCGAA
GATCACGAGAGGAGGATCGAACAAAGTCCGGAACTGACCGAACTCGATGA
TGAGGCACGTGCCCAGCTTCCGCTAATCACACGATTTTACCTGGCCTTCC
AGAGCATCCATCACTATGCCTCCGATCTCCAGCAATATATCGAGGAATTG
AACACTGGCTACTATATCCAGCAGACGCTGGAGACGGTACTTCAGGAGGA
GGAGGGCCGCCAACTGCTCTGCGAATCCCTGTATCTCTTTGGTGTGATTC
TCCTCATGGTCGATTTTCACATTCCGGGGGATGTGAGAGAACGTCTGCTG
ATCGCCTACTATCGGTATAGTGGAGGAGATGCAACGCCTAGCGGAGACGA
GAGTAATATCCATGATGTTTGTCTCCTGCTCCGATCTACGGGCTATGTTC
ATCCGTCGATTGCCGCTAAAGTGCTCGGTTTGGGTGGCAAACAGGCAGGC
GCTAGAGCTGCTAGCCTTGTGGTTCCCCGATACCCGGAGGCCTACTTCTC
TCGCTTCCGTTTCGATGAGAATTTCGTGGATCTAGTGGTGGCTCGTCTGC
GGTGCGATGATATATACAACCAACTGAACCTGTATCCACATCCTGCCCAT
CGCTCCACGGCTCTGTCTACTCAGCGGCCATGCTGTATGTGTGCTTGTAT
TTCTGCCCGCAAGTTCTTCATTCCCAAGGCTCACAGATGCGCGAAATTGT
GGACAGTTCTTTTGCGACAACTGGACCATATCCGTGTACATGGGCATGAC
AGTGAATTCTGGTGGATGCCTGATGGATTTCAAAGCCGCTTCGATCTGCT
TATGAAAATGTGATAGTCCCACCGCCAATCAAAGCACTTCTGTCAGCAGC
AACGGGCCATTGGCAAGATCACTTAAAAACCAAGAGATTGTCGTGAAAGA
GTCTAATTGACACTTTGTGTTTGGG
FMO11851.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12272-RB | 3814 | CG12272-RB | 186..1308 | 9..1124 | 5075 | 97.6 | Plus |
| CG12272-RA | 3762 | CG12272-RA | 134..1256 | 9..1124 | 5075 | 97.6 | Plus |
| CG12272-RC | 3690 | CG12272-RC | 355..1184 | 302..1124 | 3610 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16122523..16123345 | 230..1052 | 3725 | 98.4 | Plus |
| 3L | 28110227 | 3L | 16122187..16122305 | 9..127 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 16122360..16122465 | 126..231 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:18:02 has no hits.
FMO11851.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:27 Download gff for
FMO11851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12272-RB | 162..1260 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:31 Download gff for
FMO11851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12272-RA | 130..1228 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:53 Download gff for
FMO11851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12272-RA | 130..1228 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:53 Download gff for
FMO11851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16122183..16122305 | 1..127 | 96 | -> | Plus |
| 3L | 16122362..16122464 | 128..230 | 100 | -> | Plus |
| 3L | 16122524..16123396 | 231..1097 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:31 Download gff for
FMO11851.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16115283..16115405 | 1..127 | 96 | -> | Plus |
| arm_3L | 16115462..16115564 | 128..230 | 100 | -> | Plus |
| arm_3L | 16115624..16116496 | 231..1097 | 97 | | Plus |
