FMO11852.5prime Sequence
1160 bp (1033 high quality bases) assembled on 2012-06-25
> FMO11852.5prime
CAGTCGACATGCGCGCCACCATCGAGTTCGAGGAGTGCCTGAAGGATTCT
CCCAGATTCAGACAATTTGTTTCCAAGGAGGAGAGCGACATCGAGCACTT
GGAGCAGCGCTTGGAGAAAATCATCAAGCTGTGCAATGTGGCCGTGGACT
CGGGCAAGGAGTATGTCAAGAACCAGAGCGCCTTTGCCATGTCCCTGTGG
GATCTACAACAGCACTTTCTCGACAATAAGAACGCGCACAATGCGCTGGG
CAAGCTGATTCACTGCTTCCAGGAGATGAACAAGTTCCACACCATACTCT
TGGATCAGGCTAGCCGCACGGTGCTTAAAAATCTCAGTGTGTTCGTGAAG
GACGACATTAACCAGGTGAAGGACTATAAGGGACATTTTCTCAAGGTTTC
CGAAGGCTATGACAATGCGCTGATTAAAAACGCTCAGGCCAGCAAAAACC
GACCGCAGGAGATGCAGGAGGCTGCCAATATCCTTTCTGCCTCGAAATCG
TGCTTCCAACACACCGCTCTGGATTATGTCAACTATATAACGCTAGCGCA
GGCTCGCAAGGTCCCCTCAATACTATCCACGCTGTTGGATTACTATCAGG
CGTGCGTGACCTATTACCACCAGGGCTTCGATCTGTGCAACGACTTCGAC
GAGTTCTTTAAGAATATCAGCGAGGATTTGAACGCTTTGCGCGGTGACTA
TCAGCAGCTGGAGAAGGCCATGCAGAATCGCCATATGAGCGTTAATCGCT
ACTGCGACTCGAACACCAATAGCACGTCCCACAAGATCGAGGGCTACCTA
TTCAAGAAGAAGTCCAAGGGCTTCAAGACCTGGTGCCGACGATGGTTCTA
CCTCAGCGACAACCAGCTCGTATATAGAAAACGCAGCAACGAGGACTCGT
TCTCGGTCATGGAGGAGATCTGCGCATCTGCAGCGTGCGCCCGGTAAACG
AGGGTGACCGCCGTTTCTGCTTCGAAGTTCATCTCCGCCGACCAATTCTC
ACAATCCTGCAGCTGACTCCGCTGAAATGCTTCCCTGGTGAATTCGCGGC
TACAGCACAAGCATCGGGGCTGCCAATTCAGCATGACTCCACGGCAATCA
CTCCGCGACCACAAATTCGGACGAAACCCACCATAATTCGCTGCCGCCAA
AGCGTAATTC
FMO11852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenB1A-RA | 3464 | CG6742-RA | 390..1530 | 9..1156 | 5135 | 97.3 | Plus |
| CenB1A-RB | 2565 | CG6742-RB | 41..631 | 580..1156 | 2060 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23121336..23121632 | 581..877 | 1470 | 99.7 | Plus |
| 3R | 32079331 | 3R | 23120611..23120782 | 267..438 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 23120839..23120985 | 435..581 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 23120264..23120383 | 59..178 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 23120459..23120555 | 177..273 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 23121826..23121926 | 876..975 | 455 | 99 | Plus |
| 3R | 32079331 | 3R | 23118789..23118841 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:18:05 has no hits.
FMO11852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:27 Download gff for
FMO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenB1A-RC | 387..1532 | 9..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:33 Download gff for
FMO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RA | 390..1535 | 9..1160 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:54 Download gff for
FMO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenB1A-RA | 390..1535 | 9..1160 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:54 Download gff for
FMO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23118789..23118841 | 9..61 | 100 | -> | Plus |
| 3R | 23120267..23120383 | 62..178 | 100 | -> | Plus |
| 3R | 23120461..23120554 | 179..272 | 100 | -> | Plus |
| 3R | 23120617..23120781 | 273..437 | 100 | -> | Plus |
| 3R | 23120842..23120985 | 438..581 | 100 | -> | Plus |
| 3R | 23121337..23121632 | 582..877 | 99 | -> | Plus |
| 3R | 23121828..23121944 | 878..995 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:33 Download gff for
FMO11852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18944511..18944563 | 9..61 | 100 | -> | Plus |
| arm_3R | 18945989..18946105 | 62..178 | 100 | -> | Plus |
| arm_3R | 18946183..18946276 | 179..272 | 100 | -> | Plus |
| arm_3R | 18946564..18946707 | 438..581 | 100 | -> | Plus |
| arm_3R | 18946339..18946503 | 273..437 | 100 | -> | Plus |
| arm_3R | 18947059..18947354 | 582..877 | 99 | -> | Plus |
| arm_3R | 18947550..18947666 | 878..995 | 96 | -> | Plus |
