Clone FMO11853 Report

Search the DGRC for FMO11853

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:53
Vector:pMK33-CFH-BD
Associated Gene/Transcriptklar-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11853.5prime Sequence

1091 bp (902 high quality bases) assembled on 2012-06-25

> FMO11853.5prime
TTTTTACGGATATATCCGAAATGCTTTCGGCCACTTCTTCCACCAACACA
TCACGCTCGTCATCGGAGCAAGATCTGCTCGGCGCCTGGGAGGATCTACT
TAGCTGGAGCGAGAATGCCTCCGCTGCCCGCAAATTGCAGCAGGAGATGA
GTGTGTTGAAGAGCTCGCTGCAGCGCCTGGGAGACAAGCCAACTCCAGAG
CTCCTCGATACGGAGCCGGCCATCCAAATAGCAGTGGAGGCGCTCAAGTT
GGAGCAGACGCAACTGACCAGCTATAGGACCAACATGCTGCGTCTTAACG
CCTCCGTCCACAGTTGGCTTACCAAGCAGGAGCGGCGACTGCATATCGCC
TTGGAGGAACAGGAGCAGCAACAGGAGTCCGAACAACTCAAGCAGCAAAA
ACTTGTTGAAGAGGAGAAGGGAGCTGACGTTCAGAAGGAGCTGGCGTCTA
CCGGAGCAGTGGCCATCACGGTCACCGACAGCAATGGTAATCAGGTGGAG
GCACTAGCCACAGGAGAAGCCTCCACCTCCACGCCAGCCTGGGATGTGCA
CACGCTGATGTCATCGGAGCAGGAGTTCCATAAGCATCTGAAGAACGAAG
TGAGCGACATGTACAGTTCCTGGGATGAGGCGGATGCCAGAATCAACACG
CAACTGGAAATGCTTACCAACTCGCTTATTGCCTGGAGGCAGTTGGAGTC
CGGTTTGAGTGAGTTCCAATTGGCTTTGGGCCAAGATAGGGGCACTCTGA
AGGGTCTTGAAGGAGCTCTGGACAAGGGACAAGCCACACCAGTCGAGCTG
GCCCAGATGTAAACTGGTGGCCCAAGCTGCTGTCCGAAAAGGTTCACGTA
AGCCAAGAGCAACTTTGGCCGTCCAGCAGCACCTGGAACCCAACCACTTC
TACACATTACGAAGTTACAAGCTCAATGGCTCGCTATCAAATTCCGGATC
TCTGATGGAGGAGCTACTTCTGATGGTTGCCTGTCCAAAAGGGAACGACG
AACTGGGAGTTCTTCCAACGCCTAACAAAGCAGTTGAACAACCTCTGGCG
CGGGAAACGAACCATGCCTCTATTGCGTGCTCCGAAGTGAA

FMO11853.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
klar-RC 3032 CG17046-RC 537..1615 6..1076 4790 97 Plus
klar-RG 4934 CG17046-RG 2503..3517 70..1076 4470 96.9 Plus
klar-RF 7528 CG17046-RF 5097..6111 70..1076 4470 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 436222..436615 640..247 1940 99.5 Minus
3L 28110227 3L 435760..436162 1036..638 1355 93.6 Minus
3L 28110227 3L 436674..436851 248..71 890 100 Minus
3L 28110227 3L 440494..440560 72..6 335 100 Minus
Blast to na_te.dros performed 2014-11-28 03:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2397 321..402 128 63.4 Plus
roo 9092 roo DM_ROO 9092bp 1089..1151 325..387 125 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2823 358..402 117 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6876 325..483 115 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6596 356..418 112 67.7 Plus

FMO11853.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:28 Download gff for FMO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
klar-RC 515..1581 1..1061 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:35 Download gff for FMO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
klar-RC 532..1598 1..1061 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:56 Download gff for FMO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
klar-RC 532..1598 1..1061 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:56 Download gff for FMO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 435733..436159 641..1061 93 <- Minus
3L 436222..436613 249..640 99 <- Minus
3L 436674..436849 73..248 100 <- Minus
3L 440494..440565 1..72 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:35 Download gff for FMO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 435733..436159 641..1061 93 <- Minus
arm_3L 436222..436613 249..640 99 <- Minus
arm_3L 436674..436849 73..248 100 <- Minus
arm_3L 440494..440565 1..72 94   Minus