FMO11853.5prime Sequence
1091 bp (902 high quality bases) assembled on 2012-06-25
> FMO11853.5prime
TTTTTACGGATATATCCGAAATGCTTTCGGCCACTTCTTCCACCAACACA
TCACGCTCGTCATCGGAGCAAGATCTGCTCGGCGCCTGGGAGGATCTACT
TAGCTGGAGCGAGAATGCCTCCGCTGCCCGCAAATTGCAGCAGGAGATGA
GTGTGTTGAAGAGCTCGCTGCAGCGCCTGGGAGACAAGCCAACTCCAGAG
CTCCTCGATACGGAGCCGGCCATCCAAATAGCAGTGGAGGCGCTCAAGTT
GGAGCAGACGCAACTGACCAGCTATAGGACCAACATGCTGCGTCTTAACG
CCTCCGTCCACAGTTGGCTTACCAAGCAGGAGCGGCGACTGCATATCGCC
TTGGAGGAACAGGAGCAGCAACAGGAGTCCGAACAACTCAAGCAGCAAAA
ACTTGTTGAAGAGGAGAAGGGAGCTGACGTTCAGAAGGAGCTGGCGTCTA
CCGGAGCAGTGGCCATCACGGTCACCGACAGCAATGGTAATCAGGTGGAG
GCACTAGCCACAGGAGAAGCCTCCACCTCCACGCCAGCCTGGGATGTGCA
CACGCTGATGTCATCGGAGCAGGAGTTCCATAAGCATCTGAAGAACGAAG
TGAGCGACATGTACAGTTCCTGGGATGAGGCGGATGCCAGAATCAACACG
CAACTGGAAATGCTTACCAACTCGCTTATTGCCTGGAGGCAGTTGGAGTC
CGGTTTGAGTGAGTTCCAATTGGCTTTGGGCCAAGATAGGGGCACTCTGA
AGGGTCTTGAAGGAGCTCTGGACAAGGGACAAGCCACACCAGTCGAGCTG
GCCCAGATGTAAACTGGTGGCCCAAGCTGCTGTCCGAAAAGGTTCACGTA
AGCCAAGAGCAACTTTGGCCGTCCAGCAGCACCTGGAACCCAACCACTTC
TACACATTACGAAGTTACAAGCTCAATGGCTCGCTATCAAATTCCGGATC
TCTGATGGAGGAGCTACTTCTGATGGTTGCCTGTCCAAAAGGGAACGACG
AACTGGGAGTTCTTCCAACGCCTAACAAAGCAGTTGAACAACCTCTGGCG
CGGGAAACGAACCATGCCTCTATTGCGTGCTCCGAAGTGAA
FMO11853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
klar-RC | 3032 | CG17046-RC | 537..1615 | 6..1076 | 4790 | 97 | Plus |
klar-RG | 4934 | CG17046-RG | 2503..3517 | 70..1076 | 4470 | 96.9 | Plus |
klar-RF | 7528 | CG17046-RF | 5097..6111 | 70..1076 | 4470 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 436222..436615 | 640..247 | 1940 | 99.5 | Minus |
3L | 28110227 | 3L | 435760..436162 | 1036..638 | 1355 | 93.6 | Minus |
3L | 28110227 | 3L | 436674..436851 | 248..71 | 890 | 100 | Minus |
3L | 28110227 | 3L | 440494..440560 | 72..6 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2397 | 321..402 | 128 | 63.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1151 | 325..387 | 125 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2823 | 358..402 | 117 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6876 | 325..483 | 115 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6596 | 356..418 | 112 | 67.7 | Plus |
FMO11853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:28 Download gff for
FMO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
klar-RC | 515..1581 | 1..1061 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:35 Download gff for
FMO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
klar-RC | 532..1598 | 1..1061 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:56 Download gff for
FMO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
klar-RC | 532..1598 | 1..1061 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:56 Download gff for
FMO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 435733..436159 | 641..1061 | 93 | <- | Minus |
3L | 436222..436613 | 249..640 | 99 | <- | Minus |
3L | 436674..436849 | 73..248 | 100 | <- | Minus |
3L | 440494..440565 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:35 Download gff for
FMO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 435733..436159 | 641..1061 | 93 | <- | Minus |
arm_3L | 436222..436613 | 249..640 | 99 | <- | Minus |
arm_3L | 436674..436849 | 73..248 | 100 | <- | Minus |
arm_3L | 440494..440565 | 1..72 | 94 | | Minus |