FMO11856.5prime Sequence
1132 bp (999 high quality bases) assembled on 2012-06-25
> FMO11856.5prime
CCGTCGACATGCGCAGACAGCAGTCCTACCGTTTCGAGGACAACGAGTCC
ACGTCTTACGCTCTGAGGATGAATCGTCGCTTTTCGAGAGTGGAGTCCGG
GGCGGACCTTAAGGATTATTTCGATCGGGGTGATATCGCTTCCCGGGAGA
ACCGCTGGAACTTCGAGGTGGCATGGGAGGTGGCCAACAAGGTGGGCGGT
ATTTACACGGTGATCCGGTCGAAGGCATATGTCTCCACCGAGGAGATGGG
CGAGCAGTTGTGTATGATGGGTCCCTACAAGGAGCACTGTGCCCGCACCG
AGATGGAGGAGATGGAGTTCCCCAGGGGAAACCCCCTACTAGACGCTGTC
AACTCATTGCGCTCGCGAGGCTATAAAATCCACACCGGTCGCTGGCTGGT
GGACGGAAATCCTCAATTAATCCTGTTCGATATTGGATCAGCCGCTTGGA
AGCTGGATCAGTTCAAATCGGAGATGTGGGAGAAGTGCCATATTGGAATA
CCTCATTTGGATATCGAGACGAACGATGCCATTATCCTTGGCTTTATGAT
TGCCGAGTTCCTGGAGGAGTTCCGCAACTTTGCCGTGACTTATTCGCAGA
ACAACGAATTGAGCGCTCCGAGGATTGTCGCCCACTTCCACGAATGGCAA
GCTGGCGTGGGTCTCATTGTCCTACGTACTCGTCTGGTGGAGATCGCCAC
TGTGTTCACTACCCACGCCACATTGTTGGGTCGTTACTTGTGCGCCGGCA
ACACCGATTTCTACAACAATCTGGACAAGTTCGCCGTGGACGAAGAGGCG
GGCAAGCGCCAAATCTATCATCGTTATTGCCTGGAGCGAGGTGCACCCAC
TTGGCTCATGTGTTCACCACCGTCTCCGAGATTACGGGCTACGAGGCAGA
GCATCTGCTCTAGCGCAAACCGGACATCATCACCGCCCAATGGACTGAAC
GTGAAAAGTTCTCGGCCATCCACGAGTTCCAGAACTTGCACGCGTTTGCC
CAGGAAAAGATCAACGATTCCTGCCGGTCCACTTTTTACCGGCCACATTG
ACTTTGAATTAAATAGAACCTGTACTTCTCACTCGCCCGTTCGCTACGAG
TTTGGAAACACGAAGCGACCTCTTCTCTCGAG
FMO11856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyS-RA | 2584 | CG6904-RA | 95..1196 | 9..1110 | 5090 | 97.9 | Plus |
| GlyS-RD | 2473 | CG6904-RD | 43..1085 | 68..1110 | 4795 | 97.8 | Plus |
| GlyS-RC | 2487 | CG6904-RC | 57..1099 | 68..1110 | 4795 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15144290..15145240 | 1017..68 | 4535 | 99.2 | Minus |
| 3R | 32079331 | 3R | 15145318..15145377 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:18:19 has no hits.
FMO11856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:30 Download gff for
FMO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6904-RA | 193..1308 | 6..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:44 Download gff for
FMO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RA | 92..1207 | 6..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:02 Download gff for
FMO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyS-RA | 92..1207 | 6..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:02 Download gff for
FMO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15144266..15145239 | 69..1042 | 98 | <- | Minus |
| 3R | 15145318..15145380 | 6..68 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:44 Download gff for
FMO11856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10969988..10970961 | 69..1042 | 98 | <- | Minus |
| arm_3R | 10971040..10971102 | 6..68 | 98 | | Minus |
