Clone FMO11857 Report

Search the DGRC for FMO11857

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:57
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42388-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11857.5prime Sequence

1151 bp (1041 high quality bases) assembled on 2012-06-25

> FMO11857.5prime
CAGTCGACATGGGTAATGCACAGGGACAGAACGGCTTCGAGGAACTCCGG
CGATATGTGAAGCAGGGCGGTGATTTTAGCAAGGAGCTCATCTTTGTCCT
GCAGGAGAGAGCCGATTCGGAGCTGATCTACTCCAAGTCGCTATCGAAAC
TGGCCAACAAGCTGAACAAAGCGGGCAGGGAAATTCCCGGGAGCGTGGCC
GACGCCTGGCGTGGAGTGGCTACGGAGATGGAGAGCCGCAGCGACATCCA
TCGCCAGTTGGCAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGA
TCGTCGTCGAAGGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTG
GACAAGGCGGCGCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGC
CAAGAAGGCCTCCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACG
CAATGCTGGACGTGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCAC
CAGGGACCCAACAAGCAGGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAA
GGATTGCGTCAAGCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGA
AGCGTGCGGATGTGGAATACTACACCCTGTGCGTGCGTTCGGAGCGAGCA
CGCGTAGACTGGGAGATGGCCGTGCTCCGGGGAAGTGCCCAACTGCAGAG
CAGCGAACAGCAGCGGCTGGGCAATATGCACAACTTTGCCCAGCAGTATG
CACGCCTCATCTCGGACATGAATCCGATACTCGGTGGCCTGAGCACACGC
CTGCAGCCGCAACTCGATGCTTGCAATGTGGCTAAGGATATGCAAGTGGT
GCGCCACATCCGCCGCAATTCGGAGGGACCCAGTGAGCAACTCCTACCGG
ACTTTTACTGCGAACACACCACGCTGGCCATGAATCGGGAGCGTCGCAAG
CACGCTCTGATCAGCTGCTGCAGCTGGTCAAGACGATTTGGAGCGGGGAG
CGACGATCCCGCGACGATTGAGGGACTGTCGCCAATCCGCTTAACCATCA
GGAGCATCAGAACATCACCGAATAAGCTGTACCTCAATCCGTCAATGCTG
ACCTATTGGAAGGCGCCCATTCTCAGCCTGAACTCCTGCCTCTCTTGGAA
C

FMO11857.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG42388-RC 3014 CG42388-RC 957..2095 9..1149 5265 98 Plus
CG42388-RF 2508 CG42388-RF 451..1589 9..1149 5265 98 Plus
CG42388-RG 5133 CG42388-RG 1833..2958 22..1149 5200 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9051467..9052215 335..1083 3355 98.5 Plus
X 23542271 X 9051183..9051412 108..337 1150 100 Plus
X 23542271 X 9051033..9051122 20..109 450 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:18:22 has no hits.

FMO11857.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:31 Download gff for FMO11857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42388-RC 952..2073 1..1125 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:47 Download gff for FMO11857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 446..1567 1..1125 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:04 Download gff for FMO11857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42388-RF 446..1567 1..1125 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:04 Download gff for FMO11857.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9051030..9051122 14..109 96 -> Plus
X 9051185..9051410 110..335 100 -> Plus
X 9051468..9052210 336..1080 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:47 Download gff for FMO11857.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8945063..8945155 14..109 96 -> Plus
arm_X 8945218..8945443 110..335 100 -> Plus
arm_X 8945501..8946243 336..1080 98 -> Plus