FMO11858.5prime Sequence
1145 bp (1032 high quality bases) assembled on 2012-06-25
> FMO11858.5prime
CAGTCGACATGTCCGTGAGTCGAGTGACTATGATGCGAAAGGGCCACTCC
GGGGAGGTAGCACGCAAGCCCAACACTGTGGTGGTGTCGGTTCCACCGCT
GGTGAAGAAGTCCAGCAAGAGCCGCTCGTTCCACTTCCGCTATCTGGAGC
TGTGCCGGGCCAAGAATCTGACGCCGGTGCCGGAAATCCGCAGCAAGTCG
AATGCGACCACCACCTTTCTGGAGCTGTGCGGCGATAAGCTGGCGGTCAG
CGATTGGCAGCTCCTAACCGAGGCGCTCCACTATGATCTCGTGCTCCAGC
AGCTGGTGGTGCGCCTGCGACGCACATATCCACAAACCAACATTGATCCC
ATTGACACCGAGAAACGAGCCCGACTTTTTCGCCAGCGGCCAGTGATCTA
TACTCGCTTCATATTCAACAGTTTGGTCCAGGCGATTGCCAACTGTGTTT
CGAGCAACAAAAATCTAAGTGTGTTGAAGCTGGAGGGATTGCCATTGCAG
GATGGATATATCGAGACCATTGCCAAGGCACTGGCAGACAACGAATGCCT
CGAATCAGTGAGTTTTCGCAAATCCAACATTGGCGATAAGGGCTGCGAGG
TGGTGTGCAACACAGCCAAATACCTGAATCGCATCGAAGTGTTCGACCTC
TCTGAATGCGGACTTACTTCCAAGGGAGCCGAGCACGTGGCCGACATGCT
CAAGATGCAAAAGATCACCCGTTTCACGGAGGGATGGGAGAAGTCCCTCC
GCTACCGTAGCGTCGATGTGAACACGATTGGCGGTCTGCGCACGGTTTGT
TGGCTGACAACCCGGAGATTGGCGACGTGGGCATCCGGTGGATAACCGAG
GTGTTGAAAGAGGATGCTTGGATAAAAAAATCGACATGGAGGGCTGCGGC
CTGACGGATATCGGGGCAAATCTAATTCTCGATTGCTGGAGCTGAACACG
GCCATTACGGAGTTCAATGTGCGAAACAACGAAGATCAGTTAAGTTCCTG
CAACGAAATTATCCATGATCGTCTTTGGCTGTTACCAAAGGGAGAAACAG
GATCGAGTATGATCTCGTGCGTCACGGCTACAGAGCTGCCAGAACAGGAA
GTTACGTTCTAACTGCTGTCCCAACTAAGCATGGAGAGAGCACTC
FMO11858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7886-RA | 3436 | CG7886-RA | 646..1775 | 9..1123 | 5035 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14629619..14629946 | 336..9 | 1640 | 100 | Minus |
| 3R | 32079331 | 3R | 14629350..14629541 | 528..337 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 14629106..14629284 | 704..526 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 14628781..14628957 | 878..703 | 835 | 99.4 | Minus |
| 3R | 32079331 | 3R | 14628557..14628731 | 1052..878 | 520 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:17:48 has no hits.
FMO11858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:24 Download gff for
FMO11858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..1736 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:23 Download gff for
FMO11858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..1736 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:46 Download gff for
FMO11858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7886-RA | 646..1736 | 9..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:46 Download gff for
FMO11858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14628512..14628731 | 879..1090 | 91 | <- | Minus |
| 3R | 14628781..14628955 | 705..878 | 99 | <- | Minus |
| 3R | 14629106..14629282 | 528..704 | 100 | <- | Minus |
| 3R | 14629351..14629541 | 337..527 | 100 | <- | Minus |
| 3R | 14629619..14629946 | 9..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:23 Download gff for
FMO11858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10454234..10454453 | 879..1090 | 91 | <- | Minus |
| arm_3R | 10454503..10454677 | 705..878 | 99 | <- | Minus |
| arm_3R | 10454828..10455004 | 528..704 | 100 | <- | Minus |
| arm_3R | 10455073..10455263 | 337..527 | 100 | <- | Minus |
| arm_3R | 10455341..10455668 | 9..336 | 100 | | Minus |
