FMO11859.5prime Sequence
1117 bp (1009 high quality bases) assembled on 2012-06-25
> FMO11859.5prime
CAGTCGACATGTCCAACCTTAAGCGTTTCGATGATGAGGAGCGTGAGTCC
AAATATGGACGTGTCTTCGCTGTCTCCGGTCCTGTCGTCACCGCCGAGGC
CATGTCTGGATCAGCTATGTACGAGTTGGTCCGCGTCGGCTACTACGAGC
TGGTGGGCGAGATCATCCGTCTGGAGGGTGACATGGCCACCATCCAGGTG
TACGAGGAGACCTCTGGCGTAACTGTCGGAGATCCGGTGCTGCGTACCGG
CAAGCCTCTTTCCGTGGAGCTGGGACCCGGTATCATGGGCAGCATCTTTG
ACGGTATCCAGCGTCCCCTGAAGGACATTAACGAGCTGACCGAATCCATC
TACATCCCCAAGGGTGTGAACGTGCCCAGTTTGTCCCGCGTGGCCAGCTG
GGAGTTCAACCCCCTGAACGTCAAGGTCGGCTCCCACATCACCGGAGGTG
ACCTGTACGGTCTGGTGCATGAGAACACTCTGGTCAAGCACAAGATGATT
GTGAACCCCCGCGCCAAGGGAACAGTGCGCTACATCGCCCCCTCCGGCAA
CTACAAGGTCGACGATGTCGTCCTGGAGACCGAGTTCGATGGAGAGATCA
CCAAGCACACCATGTTGCAGGTGTGGCCAGTGCGTCAGCCACGTCCCGTG
ACCGAGAAGCTGCCCGCCAACCACCCCCTGCTCACCGGACAGCGTGTGCT
CGACTCGCTCTTCCCCTGTGTCCAGGGCGGTACCACCGCCATTCCCGGAG
CTTTCGGTTGCGGCAAGACTGTGATCTCGCAGGCTCTGTCCAAGTACTCC
AACTCCGATGTCATCATCTACGTCGGTTGCGGTGAGCGTGGTAACGAGAT
GTCTGAGTACTGCGTGACTTCCCCGAGCTGTCCGTGGAGATCGACGGTGT
CACGAGTCCATCATGAAGCGTACCGCCCTTGTGGCCACACCTCCAACATG
CCTGGTGCTGCTCGTGAGGCCTCCATCTTACACTGGTATTCACTTGTCGA
TACTTCCGTGAATGGTTACACGGGTCATGATGCTGATTCAACCCTCCGTG
GGCTGAGATCTCGTGAATTCTGTCGCTCGCTGAAATGCTGCGATTCGGCT
AACCAACCTACTTGGAG
FMO11859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha68-2-RF | 2528 | CG3762-RF | 146..1271 | 9..1115 | 4925 | 97.1 | Plus |
| Vha68-2-RE | 2474 | CG3762-RE | 92..1217 | 9..1115 | 4925 | 97.1 | Plus |
| Vha68-2-RD | 2444 | CG3762-RD | 62..1187 | 9..1115 | 4925 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12976121..12976824 | 80..783 | 3505 | 99.9 | Plus |
| 2L | 23513712 | 2L | 13002621..13003318 | 784..87 | 1765 | 83.5 | Minus |
| 2L | 23513712 | 2L | 12976928..12977140 | 779..989 | 840 | 97.2 | Plus |
| 2L | 23513712 | 2L | 13002339..13002539 | 978..781 | 525 | 87.6 | Minus |
| 2L | 23513712 | 2L | 12979335..12979627 | 72..364 | 445 | 76.8 | Plus |
| 2L | 23513712 | 2L | 12975637..12975712 | 9..84 | 380 | 100 | Plus |
| 2L | 23513712 | 2L | 12979803..12980049 | 537..783 | 290 | 74.5 | Plus |
| 2L | 23513712 | 2L | 12980110..12980186 | 781..857 | 250 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:17:52 has no hits.
FMO11859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:25 Download gff for
FMO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-2-RC | 142..1180 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:26 Download gff for
FMO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-2-RD | 55..1093 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:47 Download gff for
FMO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha68-2-RD | 55..1093 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:47 Download gff for
FMO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12975630..12975712 | 1..84 | 95 | -> | Plus |
| 2L | 12976126..12976823 | 85..782 | 100 | -> | Plus |
| 2L | 12976932..12977189 | 783..1032 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:26 Download gff for
FMO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12975630..12975712 | 1..84 | 95 | -> | Plus |
| arm_2L | 12976126..12976823 | 85..782 | 100 | -> | Plus |
| arm_2L | 12976932..12977189 | 783..1032 | 94 | | Plus |
