Clone FMO11860 Report

Search the DGRC for FMO11860

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSara-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11860.5prime Sequence

1112 bp (1035 high quality bases) assembled on 2012-06-25

> FMO11860.5prime
CAGTCGACATGGACTTGGTGGACATTGATCAGGTTTTGGACAATCTGGAA
CTGAGCATTGCCGCCGATGAGCAGCTGAGTAGAAATGCAGCGGCAGCAGC
AGCTGCAGGTGCAAATCCTGGCCGTTTTCTGGGCGACGGAGCAAGTGCAT
CGATCAGTGGAGTTGGAGCTGGCGCCGGAGTATCGGGAGCTGCGGGAGTA
ACACCAACACCGGCGTCTGGAAAGTCCTTTGTGGGCGTCTCTCAGGTTTT
CAACAGCCTGGATGACTACAGGGAAAATGTGAAGTCCTTGCAGGTGGATG
CCCAATTACCCAGCTACGACTGGCAAACGGAGGCGGAACACGAAGACGAC
ATCCACAAGTTCAGCGAACAGGCGTCCAAAAATAACGGCCAGACGATAGT
ATCGTCCTCCGAATCGCTGACCACCTCATCCTGTTCCACCTTCTCGTCGG
GTCCGTCGCCCGTGAGCAATGGCAGTCACTCGGAGGAGCTAGCAACGCCC
CCCGAAGATGAGAAAACGAGTGAAGTTCAGGTGGAGCCAAAGGAACAGGA
TCAACAGCCGGAACAGGTCAAGCATGAGGACCAGCACCAAGATCAGGCTG
TTCCACCGCCAACGCAATCCAAACAAACTGTAGAGGAGTTAGCAGTTGGA
TTGTCATCCATCTCCATCACTGCGTCCGGCACAGAATCGCAATCCCTATT
GCCGGAGGAGGTCACCGCATCGTCTGTTCTCGGGCAGTCCTCGAGGAGCT
CTCGGAGGAATCGTCGCCCAGTAGAGAACCCGAAACCGAAATGACCAACG
GCATAGATGTCCCATTGGCCAATTTACCAGCATCTGTTGCGGAAGTACCG
GTCCCTAAAGAGATGGAGCAGCCAGTACAAACGGAAGAGAGGATGTGAGC
TGCCACAGGAGCAGCATCCCAGCGTAGTCACCGTTGACCTTCTGCTCCAC
CATGACGAGATCCTCGGACACGAACTGGACGCATGCTGCAAGAGATGGAT
GCAGATGACACCAGCGGACGATCAGCAAATGCCCGACGATGAGAATCCTG
CTCCGCCTCGCCAGTGACCGAGGAGGGATTTGTGCGATCCTATCGAGTGG
CCAGAGAAACAC

FMO11860.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Sara-RA 4621 CG15667-RA 187..1265 8..1076 5100 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21482224..21483043 8..826 4050 99.9 Plus
2R 25286936 2R 21483193..21483451 827..1076 755 95 Plus
Blast to na_te.dros performed 2014-11-28 03:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 4304..4384 128..206 147 67.9 Plus

FMO11860.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:25 Download gff for FMO11860.5prime
Subject Subject Range Query Range Percent Splice Strand
Sara-RB 85..1180 1..1086 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:27 Download gff for FMO11860.5prime
Subject Subject Range Query Range Percent Splice Strand
Sara-RA 180..1275 1..1086 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:53:49 Download gff for FMO11860.5prime
Subject Subject Range Query Range Percent Splice Strand
Sara-RA 180..1275 1..1086 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:53:49 Download gff for FMO11860.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21483193..21483476 827..1097 93 -> Plus
2R 21482217..21483043 1..826 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:27 Download gff for FMO11860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17369722..17370548 1..826 99 -> Plus
arm_2R 17370698..17370981 827..1097 93 -> Plus