Clone FMO11862 Report

Search the DGRC for FMO11862

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:62
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32582-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11862.5prime Sequence

275 bp (275 high quality bases) assembled on 2012-06-25

> FMO11862.5prime
CAGTCGACATGGGGCAAGGAGCTAGACGAATATTGCGGGCGTCCCGCTCG
CAGATTTGCGGTAGTCTTCGAACGGGCGAAGGGTCCAGCACCTCAGCAAG
TTGTCGAAAAGTGGTAAAAAACCCAGCTGGATTGTCCGAATTTGACCAGT
GCTCGATGCTTTGGCCGTTCGCAGTCTGCCGCATTCCTGCTAGGCGTCCC
ACCCGCCCAGGATTCCTCAACCCAGGGCCATTGGGAGAGGATCCGTCGCT
AACAGAAGCAAGCTTTCTAGACCAT

FMO11862.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp47-RB 1285 CG8928-RB 1132..1189 104..47 230 93.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15836523..15836670 110..257 740 100 Plus
X 23542271 X 15836295..15836397 9..111 515 100 Plus
X 23542271 X 15946096..15946153 104..47 230 93.1 Minus
Blast to na_te.dros performed on 2014-11-28 03:18:38 has no hits.

FMO11862.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:33 Download gff for FMO11862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-RB 127..388 2..269 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:55 Download gff for FMO11862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-RB 105..366 2..269 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 03:54:11 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:11 Download gff for FMO11862.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15836292..15836397 2..111 96 -> Plus
X 15836525..15836674 112..262 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:55 Download gff for FMO11862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15730325..15730430 2..111 96 -> Plus
arm_X 15730558..15730707 112..262 98   Plus