FMO11865.5prime Sequence
758 bp (758 high quality bases) assembled on 2012-06-25
> FMO11865.5prime
CAGTCGACATGGCTCAAAACTTGACCATGTTGGTGGCTGAAAGCAACAGC
AGTAACAATAGTACAACCAACAGCAATGAAAACAACAATAGTAGCAACAC
GCCAGTCAATTTCAAGCCAAAGGATACGAATGGCTGGAAGGATTACAAGA
AACTAAAGACATATCTCATCCTAAAGGATCAGCAAAGCGAAAAGGCATCT
CATAAACCGGAGTCGGAGCGATCTTATCTCCTGAGAAAACGCTCCACGCC
CGCGGCCGAAAGAACCACTTTCGTTTGCTACACCTGTGGCACGGACACGC
CCTCCTCGCAACTTCGCCTTGTCTACTGCTGCCCGAATGCCGAAAGGGAG
CCCTATTATCCATTCATCAAGACCATGAAGGTCTACAAAAACGCTAGTCC
AATTAGCCCGCAAGGCATGGTCCAGGTCTGCTCCACCTGCAACGAGAAGC
ACTCCGGCTTGGCGGAGGGCGGTCCACCTCCAGCTTCATCCAGCATCCAC
TCCGCAGTGGGTGGAGGTTCGCCCAGTGCTGGCCACTCGCTGGAATCGAA
TTCGGCCATGTACAGCACCAGTGGAGCGATAACCGGAAATAGTGGGGCAC
AATTTGGGGGTCGTAACTCACCATCCGAGAAATCCCTGGCCAATTCGGAC
TCCATGAGTAATGTGCGATTTAGGGTAAGGAATTCGCCGATAACTGGTAG
AACGATAGGGTCGGAATTGGAATTCTTCTCTTCACTGAAGGCAAGCTTTC
TAGACCAT
FMO11865.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| px-RB | 5214 | CG4444-RB | 308..973 | 9..674 | 3330 | 100 | Plus |
| px-RE | 8360 | CG4444-RE | 2140..2621 | 193..674 | 2410 | 100 | Plus |
| px-RA | 6842 | CG4444-RA | 2120..2601 | 193..674 | 2410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22540371..22540698 | 740..413 | 1640 | 100 | Minus |
| 2R | 25286936 | 2R | 22540757..22540979 | 415..193 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 22543329..22543515 | 195..9 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6862 | 42..100 | 142 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1098..1176 | 42..120 | 142 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2419 | 42..99 | 128 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1153 | 42..88 | 111 | 74.5 | Plus |
FMO11865.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:35 Download gff for
FMO11865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| px-RC | 297..1042 | 1..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:03 Download gff for
FMO11865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| px-RB | 299..973 | 1..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:18 Download gff for
FMO11865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| px-RB | 299..973 | 1..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:18 Download gff for
FMO11865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22540366..22540696 | 415..748 | 98 | <- | Minus |
| 2R | 22540758..22540977 | 195..414 | 100 | <- | Minus |
| 2R | 22543330..22543524 | 1..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:03 Download gff for
FMO11865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18427871..18428201 | 415..748 | 98 | <- | Minus |
| arm_2R | 18428263..18428482 | 195..414 | 100 | <- | Minus |
| arm_2R | 18430835..18431029 | 1..194 | 98 | | Minus |
