Clone FMO11866 Report

Search the DGRC for FMO11866

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:66
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12522-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11866.5prime Sequence

403 bp (403 high quality bases) assembled on 2012-06-25

> FMO11866.5prime
GGCCGTCCTGGCCACGCTGGTTGTCCTGTCCTCGCAGGCAACCTCAACAT
CGCCCACGAGTAGCTCTTCCACTTCGCCGACGAGTAGCTCTTCCACTTCG
CCCACGAGCAGTTCCTCCACCTCGCCAACGAGCAGTTCCTCCTCATCGGA
CACAACGGCCACTACCACGACCACAACTGCCGCGACCACCACCACCACAA
GCACAACTGAGGAGTCCAAGAAGAAACATCGCCGCAGGCACCGCCGCCGG
AGGATCATCATCATCCGACGCGTTGGCGGTGGATTAAGGCGCCGCAGAGA
GCGCGACGGCGACGAGGATGGTGGCCGCGTCGTGAGGCGCATCCGTGTGC
GCGAAGGAAGATTCAGGCGTCGTGATGCCTTCTTCGCAAGCTTTCTAGAC
CAT

FMO11866.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12522-RA 498 CG12522-RA 55..439 1..385 1925 100 Plus
CG32071-RA 453 CG32071-RA 65..174 9..118 490 96.4 Plus
CG32071-RA 453 CG32071-RA 106..300 74..262 215 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11108289..11108673 1..385 1925 100 Plus
3L 28110227 3L 11103700..11103809 118..9 490 96.4 Minus
3L 28110227 3L 11108338..11108406 74..142 240 89.9 Plus
3L 28110227 3L 11108362..11108430 50..118 240 89.9 Plus
3L 28110227 3L 11103698..11103768 144..74 205 85.9 Minus
Blast to na_te.dros performed on 2014-11-28 03:18:53 has no hits.

FMO11866.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:36 Download gff for FMO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12522-RA 27..414 1..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:05 Download gff for FMO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12522-RA 55..442 1..389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:19 Download gff for FMO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12522-RA 55..442 1..389 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:19 Download gff for FMO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11108289..11108676 1..389 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:05 Download gff for FMO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11101389..11101776 1..389 99   Plus