FMO11869.5prime Sequence
470 bp (470 high quality bases) assembled on 2012-06-25
> FMO11869.5prime
CAGTCGACATGGATAATCTGGGCGTCGTGCTCCTGGTCCTGTGCGCCTTC
AGCTTCCTGCTCTTTCTCCTGCGAGTGCTTCTGATTGCCTGTCGCTCGTA
CTCGATGTCGTTGCGCCCGAAGCAGGAACAAGCCCGTCGCCAAATGGAGA
TCAATGTGACGAACAATTGCAACGGCGGCTCCGGAGGAGTCGGAAACGTG
TGCTCAAACAGCCAGAACGAAGTTAGTGTCCTGCCCAAGACCTTGGATTT
GCCGCCCAGCTACGACGAGGCCGCTTTTAGCGAGCGAAAGCAGGACAGCA
CACTGACCATAGCCACCAGCTTGGAAGCGAGCAATCCCAATTTGGCGGTT
GGAATTAACGAACCACCGCCGGTTTACGAGGCGAACGTGGCCACAACCAC
CACTTCCACCACCACCACCGTATTTTTGGTCAACGGCCAACCACCAGTGG
TGGCAAGCTTTCTAGACCAT
FMO11869.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4741-RB | 854 | CG4741-RB | 245..692 | 5..452 | 2225 | 99.8 | Plus |
| CG4741-RA | 881 | CG4741-RA | 394..719 | 127..452 | 1615 | 99.7 | Plus |
| CG4741-RC | 880 | CG4741-RC | 437..758 | 131..452 | 1610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24610963..24611284 | 452..131 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 24614842..24614914 | 77..5 | 350 | 98.6 | Minus |
| 2R | 25286936 | 2R | 24614729..24614786 | 132..75 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:19:04 has no hits.
FMO11869.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:38 Download gff for
FMO11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RB | 223..677 | 1..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:12 Download gff for
FMO11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RB | 241..695 | 1..456 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:23 Download gff for
FMO11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RB | 241..695 | 1..456 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:23 Download gff for
FMO11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24610960..24611282 | 133..456 | 99 | <- | Minus |
| 2R | 24614729..24614786 | 75..132 | 100 | <- | Minus |
| 2R | 24614845..24614915 | 1..74 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:12 Download gff for
FMO11869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20498483..20498805 | 133..456 | 99 | <- | Minus |
| arm_2R | 20502252..20502309 | 75..132 | 100 | <- | Minus |
| arm_2R | 20502368..20502438 | 1..74 | 94 | | Minus |
