Clone FMO11871 Report

Search the DGRC for FMO11871

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30005-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11871.5prime Sequence

710 bp (710 high quality bases) assembled on 2012-06-25

> FMO11871.5prime
CAGTCGACATGTCCAAGCCAATTAGATTCTATTACGATTTGTTGTCCCCG
ATCGCCCGTGGTCTATGGATTGGTTTAAAATTCAGCAACTCACCCGTTGA
GTATTGCCCGATTGCCCTGCGAAAATTTGAGCAATTGACCGACGAGTACA
AGAAGATCAATCGATTCCAGAAGGTGCCCGCCATTGTGGGTGGGGACTTC
CATTTGTCTGAGACCATAGCGATTATAAGATATCTCGCAGACAAAGGTCA
GTTCGATGAGAAGCTCTACCCAAAGACGCTGGAGAACCGTGCCCGAGTGG
ATGAGTTCCTTGAGTGGCAACACCTGAACATTCGTCTTGCATGTTCCATG
TACTTTCGAGATGCCTGGCTGTTTCCCATGAACGGGATAGCGCCCAAGCC
CAAGCCAGAGCAGATTCAAGCACTGATTGAGGGAGTGGAAAACAATCTGG
GTTTACTGGAGCGCCTGTGGCTGGAAAATGATTTTTTGGTTGGGAAAAAC
CTGACAATGGCTGATATCCTTGGCTCTTCCGAAATCAACCAGCTGAGGCT
CTGCCAATACAGAGTGGACGAGAAAAAGTTCCCAAAGGTGGTCAAATGGT
TGGAACGCGTAAGGGTATCCGCAAATCCCTACCATGACGAGGGACTGACT
TTTATTGACCGAAAATCTAAGCAATCGACGGCGGCAAAGTTGGCAAGCTT
TCTAGACCAT

FMO11871.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
GstT2-RA 887 CG30005-RA 75..759 8..692 3425 100 Plus
CG12926-RA 1347 CG12926-RA 1253..1347 692..598 475 100 Minus
GstT1-RA 997 CG30000-RA 196..701 105..610 335 72.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9607699..9608018 228..547 1600 100 Plus
2R 25286936 2R 9608077..9608222 547..692 730 100 Plus
2R 25286936 2R 9607366..9607489 8..131 605 99.2 Plus
2R 25286936 2R 9607536..9607642 127..233 520 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 03:18:29 has no hits.

FMO11871.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:32 Download gff for FMO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30005-RA 72..763 1..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:50 Download gff for FMO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT2-RA 72..763 1..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:09 Download gff for FMO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT2-RA 72..763 1..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:09 Download gff for FMO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9607363..9607484 1..126 96 -> Plus
2R 9607536..9607638 127..229 100 -> Plus
2R 9607701..9608017 230..546 100 -> Plus
2R 9608077..9608226 547..697 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:50 Download gff for FMO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5495582..5495731 547..697 98   Plus
arm_2R 5494868..5494989 1..126 96 -> Plus
arm_2R 5495041..5495143 127..229 100 -> Plus
arm_2R 5495206..5495522 230..546 100 -> Plus