FMO11872.5prime Sequence
904 bp (904 high quality bases) assembled on 2012-06-25
> FMO11872.5prime
CAGTCGACATGTCCGAAGAAAAGAAGAATGGCGATGAATTAAACGACTTG
CTGGACAGTGCTCTCCAGGATTTCGATAAAAGTGGTGCCGGTGACCAAAA
GGAGCCGTCCGCATCATCAGATGTGGCGACCAACGCTGGACCTGAGGGCT
CTGAGGATCCAGATGCGTTTTTCATTGAGCAGGCCAAGGTGCTGGCCGAT
CGCATGAACACGCTCTTCGGAGGTCCGGACACGCCCAGTGGCGATATTCC
GCCGCTGCCCCAGGATCCCGACCAGATCATGGCCGGATTCAAGAAGATGG
CCGAAGCGGCAGCGCTCACCTTGAGCGGCGAAAATTCGGCCACCGACGAG
GATGTCTCCAAGTATTCTGATAGCATTTCCCAGGCTCTCAAGGGTCTGCA
AGAGGGCTCCGAGAACCTGGCTGCTCCCGCCTCGGAGAACGACATAGCCA
GCATGTTTGGTTCACTGAATCTTGAAGGGGCTGGCGAGGGTGATGGAAAC
ATGTTCCTACCATTCATGGAGGGCATGATGCAGAGCCTGCTCTCGGCGGA
GATTCTGTTGCCCAGCATCCGGGAGCTGCTGGAGAAGTACCCCAAGTACC
TCGAGGAGAACGACGCCAAGCTCTCCGCTGAGGACAAGGAAAGGTACCAG
AAAGCAGATGGAGCTGTACAAGGTGATTGAGGGGCATTTACAGAGCGAGA
AGACCGAGGATTCGGCCGCCGTGAAGCGAGAGAAGTTCCGCGTCGTGCTG
GACGACATGCGCAAACTGCAAGACTACGGCCAGCCGCCGCCAAGAGATTC
TGGCCGAGACGGGCGGCGACTTGCCCTTCGGCGATCCCACTGCCGGCGTA
GCAGCCGGCGGACCCGGTCCCCAGTGCCCAACCATGGCAAGCTTTCTAGA
CCAT
FMO11872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex19-RC | 1596 | CG5325-RC | 480..1355 | 9..886 | 4265 | 99.2 | Plus |
| Pex19-RA | 1217 | CG5325-RA | 101..976 | 9..886 | 4265 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12094173..12094482 | 171..480 | 1505 | 99 | Plus |
| 2L | 23513712 | 2L | 12094776..12095009 | 652..886 | 1110 | 99.1 | Plus |
| 2L | 23513712 | 2L | 12094547..12094714 | 479..646 | 840 | 100 | Plus |
| 2L | 23513712 | 2L | 12093994..12094111 | 58..175 | 560 | 98.3 | Plus |
| 2L | 23513712 | 2L | 12093862..12093913 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:18:33 has no hits.
FMO11872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:33 Download gff for
FMO11872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5325-RA | 88..967 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:46:53 Download gff for
FMO11872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 97..976 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:10 Download gff for
FMO11872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex19-RA | 97..976 | 1..886 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:10 Download gff for
FMO11872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12093858..12093910 | 1..57 | 92 | -> | Plus |
| 2L | 12093994..12094111 | 58..175 | 98 | -> | Plus |
| 2L | 12094178..12094481 | 176..479 | 99 | -> | Plus |
| 2L | 12094548..12094711 | 480..643 | 100 | -> | Plus |
| 2L | 12094769..12095009 | 644..886 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:46:53 Download gff for
FMO11872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12093858..12093910 | 1..57 | 92 | -> | Plus |
| arm_2L | 12093994..12094111 | 58..175 | 98 | -> | Plus |
| arm_2L | 12094178..12094481 | 176..479 | 99 | -> | Plus |
| arm_2L | 12094548..12094711 | 480..643 | 100 | -> | Plus |
| arm_2L | 12094769..12095009 | 644..886 | 98 | | Plus |
