Clone FMO11875 Report

Search the DGRC for FMO11875

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG16995-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11875.5prime Sequence

434 bp (434 high quality bases) assembled on 2012-06-25

> FMO11875.5prime
ACATTGTTCTTCAAGCCCACAATTTATATCGGGCCAAGCATGGTGCTCAA
CCCTTGACTTTGAGTCCCAAACTGAATCTATTGGCCACGGAATGGGCCAA
TTATTTGCTGTCCAGAAATCGCATGGAACATCGACAGAACAGTGGATATG
GTGAGAACATTTACATGGCCTCCGGGGGAAATCTGAAAGGTGCCGATGCC
GTCAGATCCTGGTACGAAGAGATTCGACAGTACAATTGTAATTCTCCGTC
GTTTCAAGGTAACACCGGCCATTTCACTCAGGTGGTCTGGAAGAGCTCCA
CCGAGCTAGGCGTGGGTTTTGCGAAGAGTGGCAGTACCATCTATGTTGTG
TGCAACTACAATCCCCCTGGCAACTACAACAACTTGGTCAGGGAGAATGT
CGCACCCCCAATGCAAGCAAGCTTTCTAGACCAT

FMO11875.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16995-RA 721 CG16995-RA 107..517 6..416 2010 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2308305..2308531 102..328 1120 99.6 Plus
2L 23513712 2L 2308154..2308249 6..101 465 99 Plus
2L 23513712 2L 2308579..2308668 327..416 435 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 03:19:21 has no hits.

FMO11875.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:42 Download gff for FMO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16995-RA 103..520 1..417 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:21 Download gff for FMO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16995-RA 103..517 1..416 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:30 Download gff for FMO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16995-RA 103..517 1..416 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:30 Download gff for FMO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2308150..2308249 1..101 96 -> Plus
2L 2308305..2308531 102..328 99 -> Plus
2L 2308581..2308668 329..416 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:21 Download gff for FMO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2308150..2308249 1..101 96 -> Plus
arm_2L 2308305..2308531 102..328 99 -> Plus
arm_2L 2308581..2308668 329..416 98   Plus