Clone FMO11877 Report

Search the DGRC for FMO11877

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptEdg91-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11877.5prime Sequence

479 bp (479 high quality bases) assembled on 2012-06-25

> FMO11877.5prime
CAGTCGACATGCTGGCCCTTTTGCTGATTGCCGGTCAAGGTCAGGCGGCG
CCGGTGAAGACCGAAGGTAGCACCTTGGGCCTTCTGGGCGGTGGATTTGG
TGGCAGTGTAGGACTTAGTGCCGGCATCGGAGTGGGTGGTGGCCTGTATA
GCGGTTTCGGAGGCGGTGGCTATCCTGGTGGCTATGCGAGTGGCTACCCA
GGTGGCTATGGTGGTGGCTACTCAGGCTATAACGGCTACGGAGGCAGTGG
ATTCGGAGGTGGCTACTATCCAGGAGGAGGTTACTCCGGCTTTGGACACA
GGCCGCATCACCACGGAGGATACTATCCGGGCGGTGGATCGTACCACAAT
CAGGGCGGATCTTATGGCGGCCACTATAGTCAGTCACAGTACTCGAATGG
ATATTACGGAGGTGGTGGCTATGGAGGCGGTGGCTATGGAGGCAATGGCT
TCTTTGGAAAGGCAAGCTTTCTAGACCAT

FMO11877.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Edg91-RB 546 CG7539-RB 12..464 9..461 2265 100 Plus
Edg91-RA 593 CG7539-RA 59..511 9..461 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17610938..17611390 461..9 2265 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:19:24 has no hits.

FMO11877.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:42 Download gff for FMO11877.5prime
Subject Subject Range Query Range Percent Splice Strand
Edg91-RB 12..469 9..466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:24 Download gff for FMO11877.5prime
Subject Subject Range Query Range Percent Splice Strand
Edg91-RA 52..516 1..466 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:33 Download gff for FMO11877.5prime
Subject Subject Range Query Range Percent Splice Strand
Edg91-RA 52..516 1..466 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:33 Download gff for FMO11877.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17610933..17611390 9..466 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:24 Download gff for FMO11877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13436655..13437112 9..466 99   Minus