FMO11878.5prime Sequence
890 bp (890 high quality bases) assembled on 2012-06-25
> FMO11878.5prime
GGTCTTAGGCGGTCCTTACCCAGGGACCAAGGATTGGGCAACTGCCTCAA
CGTGGCACTGATTTACTCAGCGCTCCTAGCACTTTTCATGACCGCCGCCC
AGGGACTACAGCTGAGTGCCTTCACAACGAAGACGCCGCGGGTCAGCAAG
TACACAACCAAGTCGCCATCGGCCTCCTCCATGAACCACGATGCCACCGC
CTCGCTGTATCGTTTCAATGCCACCAACGGCATCACCTGCATTCTGATGC
AGGTGGACGGACTTATCAGCATTAAGTACCGGAACAAGCTGAACGAGGAT
GTGGAGGCCGATTTGTACATGCCGGATGATCCCCAGCTGAGTGGCGAGTG
CTTCGAGTCCAACATGGAAATTCTCACCATGGACTTTAAGGGTTTCCGGC
TGTCCATGACATTTAAAAAGTCGTCCGGCGGCGAGGGTTGGTATATCAAC
CTGTTTGAACTGACCTACTCGTCCTCCAACTGGCTGTTCGAGCACCCCGA
TCGTCCCAACTTGGACGTGAGGCTGACCTCGCCCGCCCAGACGCCGATGT
ACTTCCCCACGCCGGTGGGTAAGTCCTATGTCTGCGACAAGGAGCAGACT
GTGATCATGTACGCCCCGCACGATTCCGGCGACCTGTCGGGGCATATAGC
CAAGCTGTATCTGCGCGACATGCACATGCAGAGCTTCATGTTCAAGGACA
GCGGCAAGTGGGGCCCGTCCTTCCACTGCAGCGCCACAGGATCCTATCGC
GACGAGACAGCGCCCCTGGCCGTGGGGAACTGCACTGGCCATTGCCGTGC
TACTGACCATATCCGGATACGGCGGTTGGAGATACTTCAAAATCAAGAAG
GTTCAGTACGGTTCTATGGAGGCAAGCTTTCTAGAACCAT
FMO11878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32225-RA | 1293 | CG32225-RA | 130..999 | 1..871 | 4315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20304701..20305112 | 831..419 | 2015 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20305511..20305760 | 420..171 | 1235 | 99.6 | Minus |
| 3L | 28110227 | 3L | 20306067..20306154 | 88..1 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 20305821..20305911 | 172..82 | 425 | 97.8 | Minus |
| 3L | 28110227 | 3L | 20304604..20304645 | 871..830 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:19:28 has no hits.
FMO11878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:43 Download gff for
FMO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32225-RA | 105..979 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:26 Download gff for
FMO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32225-RA | 130..1004 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:35 Download gff for
FMO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32225-RA | 130..1004 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:35 Download gff for
FMO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20304599..20304643 | 832..877 | 93 | <- | Minus |
| 3L | 20304701..20305110 | 421..831 | 99 | <- | Minus |
| 3L | 20305511..20305759 | 172..420 | 99 | <- | Minus |
| 3L | 20305822..20305904 | 89..171 | 100 | <- | Minus |
| 3L | 20306067..20306154 | 1..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:26 Download gff for
FMO11878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20297699..20297743 | 832..877 | 93 | <- | Minus |
| arm_3L | 20297801..20298210 | 421..831 | 99 | <- | Minus |
| arm_3L | 20298611..20298859 | 172..420 | 99 | <- | Minus |
| arm_3L | 20298922..20299004 | 89..171 | 100 | <- | Minus |
| arm_3L | 20299167..20299254 | 1..88 | 100 | | Minus |
