Clone FMO11879 Report

Search the DGRC for FMO11879

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:79
Vector:pMK33-CFH-BD
Associated Gene/Transcriptix-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11879.5prime Sequence

558 bp (558 high quality bases) assembled on 2012-06-25

> FMO11879.5prime
CCCATGTCTGGGCCACAAATGATGCAGGTAATGCAATCCTCGCCATCGGG
ACCCCCAGGACCAGTGCAGCATCAACAGCAGCAGCCTCCACAGCCACTGC
AGCAGCAGCAGCAGGCCGAAAAATTGGACAACATTTCCAGGGTGAAGAGT
TTGCTGGGACCACTGCGGGAGTCCATGTTCCTCACCATCCGGTCGAGCGC
CTTCGCGCTGCAGCAAAACAATCTCGCGGACAACTTAAAGAGGGACACGG
GTGCCCACCATGTTCCGCGGTTCGACAAGCACTTGGAAGACTTTTACGCC
TGTTGCGACCAGATCGAGATCCACTTGAAGACGGCGATGCATTGCCTCCA
GCAGCAGAACTCCTCCAATCACTATCTCCCCGGTCCGGTGACTCCCATGC
GCATGGAGACCTTTATGCCGGACAACGCCGGCCCCATTTCGTATCCCACT
TACTTGAACACGGTCCGCGTTCACATACAGTCCGCCAAGGATATACACGA
CACTCTGATTAGTGCCGCGCAGAACATTTCGCAGGCTGATGCAAGCTTTC
TAGACCAT

FMO11879.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
ix-RA 727 CG13201-RA 103..642 1..540 2685 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11359522..11360061 540..1 2685 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 03:19:31 has no hits.

FMO11879.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:44 Download gff for FMO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
ix-RA 103..650 1..548 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:28 Download gff for FMO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
ix-RA 103..650 1..548 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:37 Download gff for FMO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
ix-RA 103..650 1..548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:37 Download gff for FMO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11359514..11360061 1..548 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:28 Download gff for FMO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7247019..7247566 1..548 99   Minus