FMO11883.5prime Sequence
967 bp (-78 high quality bases) assembled on 2012-06-25
> FMO11883.5prime
CAGTCGACATGTTGCTCTTGGGCCTGAAATACGCTCTTCTACTGGCCATT
ACCGGCTGTTTCCTGGTGCCAATCCATGGATCAGGATCGGATACTGACCA
GGTCCTGCCGCACCGCATCTACCGTCTGCTGGACCGCCTCTCCGGAGGAC
GCTGCCTGAGTGCCAGCTCTACATTCGCCCTGTTGCTCTCGCAGTTTCTG
ATAAAACAGAAACTGCGTTACGTGGCGCCTACGCGTTACGAACGTCAGCT
CTACTACCATCTGCTGCACAGGATGGAACACATCAGAAGGGGATCGGGTC
TGGTTTCCAGGGAGCATGGTGTCCAGGGGGAGATTCTCAGCATTGCCTTT
CAGGCGAATGTGTTGCTGCTGCCTCCCTCGCTGAAACTGGGCGAACTGAA
TGCCAATGGGGAGTACGAGCAGCTGGCCGAGGTCTACCCGAAAGTGGTCA
ACGAGGGCCAGCTGAACAGGACGCAGTCCGACCTCTGCCTCCGGGACATT
GTGGAACTGAAGCCACCCCACTGCAAGCTGCTCTCCGGCGAATGTTTGGA
ACTTTTGGCCAGTGATGCACCAGCCTACGGATACCAGAGAACCCATCAGG
TCCTGCTGCTCTACGTGCTGGAGCATCAGGCATGTGCCCCCCCACCTCAG
CCCACCTCATGTTTACGAACTGCTGGCCAAGAGTCAGTGCGATGAGGTGG
AACGCGAGCAGAACGCCATCCGGAGCCTGGGGCTGCCAGTCGTGTATCGC
GATCTGTATCTGGAGCAAGCCACCATCTGCGGCCTGTTTGGCTACAATGA
GTTTGTCAACTGGCGCAACGTATGGAAATTGGCAGCTGGCTGGAGGGGGA
CTCGCCGAATGATATGGATGTATTGGCTGACGACGGCGATACCAGCACAT
AAGCGATTTGGCCTTGGTCTTCTACACAAATGCACTGCTGCTGCTGCACG
CAAGCTTTCTAGACATT
FMO11883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8401-RB | 1053 | CG8401-RB | 3..946 | 7..949 | 4605 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16028605..16028805 | 7..207 | 990 | 99.5 | Plus |
| 2R | 25286936 | 2R | 16029801..16029984 | 768..949 | 805 | 98.4 | Plus |
| 2R | 25286936 | 2R | 16029491..16029660 | 599..769 | 790 | 98.8 | Plus |
| 2R | 25286936 | 2R | 16029061..16029207 | 334..480 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 16028880..16029005 | 208..333 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 16029307..16029426 | 480..599 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:19:07 has no hits.
FMO11883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:39 Download gff for
FMO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 1..949 | 5..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:14 Download gff for
FMO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 1..949 | 5..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:24 Download gff for
FMO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8401-RB | 1..949 | 5..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:24 Download gff for
FMO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16028599..16028805 | 1..207 | 98 | -> | Plus |
| 2R | 16028880..16029005 | 208..333 | 100 | -> | Plus |
| 2R | 16029061..16029207 | 334..480 | 100 | -> | Plus |
| 2R | 16029308..16029425 | 481..598 | 100 | -> | Plus |
| 2R | 16029491..16029660 | 599..769 | 98 | -> | Plus |
| 2R | 16029803..16029987 | 770..953 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:14 Download gff for
FMO11883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11916104..11916310 | 1..207 | 98 | -> | Plus |
| arm_2R | 11916385..11916510 | 208..333 | 100 | -> | Plus |
| arm_2R | 11916566..11916712 | 334..480 | 100 | -> | Plus |
| arm_2R | 11916813..11916930 | 481..598 | 100 | -> | Plus |
| arm_2R | 11916996..11917165 | 599..769 | 98 | -> | Plus |
| arm_2R | 11917308..11917492 | 770..953 | 97 | | Plus |
