FMO11885.5prime Sequence
683 bp (683 high quality bases) assembled on 2012-06-25
> FMO11885.5prime
CAGTCGACATGAAGTTGGACCTTACCATGAACGACCGTTTCAATCAGCGG
TTTCAGTCGGTTTATGGCGGACTTGTTCCCCAGATCGCCCGACTGGTGCC
CTTCAACGACTCTGAGGTGACCTGCATCCTGATGATCTACTACAAGTATA
GTCTCCAGAATGGGCCCTCTGCTCGCCGAATAACATCCAGCCAGTTTGTG
AACATTGTGATCGGTTTCCAGCAGCTATATGACATGGACGTGGTGGATCG
CATCGTAACCCTAATCGCAGGTGGCAGGAAACACGTGACGCCCATGGAAT
TTGTCAACTACATGACCATTCTAATGTCCCGCGACATGGAACGGAAAATG
GAATTTGCATATATGGTTTACGACAAAAATGGCATGGGTATTAATAGAGA
GATCATTTCATCTTCGGTCGAGAGGTTTTTCGTCGGCGACGACGACGAGG
TACTCGAGATGCGACTGGACATGGTCGATTTTCTACTCCTCAAATTTGAT
GAAGACCAAGACGGCTACATCTCATTTGAGGAGTATAGATCGATCGTGTT
GCAGCAGCCGCGTCTGCTGGAGTTTCTGGGTCCCATCTTTCCCTCGGACG
AGACGCGTCTGGTGGTGGCGTACTGCACTGCCATATACTCTCACATACCC
GAAATGGGTACGTTGGCAAGCTTTCTAGACCAT
FMO11885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
d-cup-RA | 1095 | CG14387-RA | 100..756 | 9..665 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12892055..12892413 | 9..367 | 1795 | 100 | Plus |
3R | 32079331 | 3R | 12892621..12892819 | 467..665 | 995 | 100 | Plus |
3R | 32079331 | 3R | 12892466..12892569 | 365..468 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:19:42 has no hits.
FMO11885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:46 Download gff for
FMO11885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
d-cup-RA | 53..717 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:35 Download gff for
FMO11885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
d-cup-RA | 92..756 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:43 Download gff for
FMO11885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
d-cup-RA | 92..756 | 1..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:43 Download gff for
FMO11885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12892047..12892411 | 1..365 | 98 | -> | Plus |
3R | 12892467..12892568 | 366..467 | 100 | -> | Plus |
3R | 12892622..12892819 | 468..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:35 Download gff for
FMO11885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8717769..8718133 | 1..365 | 98 | -> | Plus |
arm_3R | 8718189..8718290 | 366..467 | 100 | -> | Plus |
arm_3R | 8718344..8718541 | 468..665 | 100 | | Plus |