Clone FMO11885 Report

Search the DGRC for FMO11885

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:85
Vector:pMK33-CFH-BD
Associated Gene/Transcriptd-cup-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11885.5prime Sequence

683 bp (683 high quality bases) assembled on 2012-06-25

> FMO11885.5prime
CAGTCGACATGAAGTTGGACCTTACCATGAACGACCGTTTCAATCAGCGG
TTTCAGTCGGTTTATGGCGGACTTGTTCCCCAGATCGCCCGACTGGTGCC
CTTCAACGACTCTGAGGTGACCTGCATCCTGATGATCTACTACAAGTATA
GTCTCCAGAATGGGCCCTCTGCTCGCCGAATAACATCCAGCCAGTTTGTG
AACATTGTGATCGGTTTCCAGCAGCTATATGACATGGACGTGGTGGATCG
CATCGTAACCCTAATCGCAGGTGGCAGGAAACACGTGACGCCCATGGAAT
TTGTCAACTACATGACCATTCTAATGTCCCGCGACATGGAACGGAAAATG
GAATTTGCATATATGGTTTACGACAAAAATGGCATGGGTATTAATAGAGA
GATCATTTCATCTTCGGTCGAGAGGTTTTTCGTCGGCGACGACGACGAGG
TACTCGAGATGCGACTGGACATGGTCGATTTTCTACTCCTCAAATTTGAT
GAAGACCAAGACGGCTACATCTCATTTGAGGAGTATAGATCGATCGTGTT
GCAGCAGCCGCGTCTGCTGGAGTTTCTGGGTCCCATCTTTCCCTCGGACG
AGACGCGTCTGGTGGTGGCGTACTGCACTGCCATATACTCTCACATACCC
GAAATGGGTACGTTGGCAAGCTTTCTAGACCAT

FMO11885.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
d-cup-RA 1095 CG14387-RA 100..756 9..665 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12892055..12892413 9..367 1795 100 Plus
3R 32079331 3R 12892621..12892819 467..665 995 100 Plus
3R 32079331 3R 12892466..12892569 365..468 520 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:19:42 has no hits.

FMO11885.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:46 Download gff for FMO11885.5prime
Subject Subject Range Query Range Percent Splice Strand
d-cup-RA 53..717 1..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:35 Download gff for FMO11885.5prime
Subject Subject Range Query Range Percent Splice Strand
d-cup-RA 92..756 1..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:43 Download gff for FMO11885.5prime
Subject Subject Range Query Range Percent Splice Strand
d-cup-RA 92..756 1..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:43 Download gff for FMO11885.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12892047..12892411 1..365 98 -> Plus
3R 12892467..12892568 366..467 100 -> Plus
3R 12892622..12892819 468..665 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:35 Download gff for FMO11885.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8717769..8718133 1..365 98 -> Plus
arm_3R 8718189..8718290 366..467 100 -> Plus
arm_3R 8718344..8718541 468..665 100   Plus