Clone FMO11890 Report

Search the DGRC for FMO11890

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:118
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34125-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11890.5prime Sequence

472 bp (472 high quality bases) assembled on 2012-06-25

> FMO11890.5prime
CCCACCAAGCGAGGGAAGTGCTCCCGCTTACGACTATCGCCATTCCGGCG
ATGACATGGCCATGCGAGCTCCTCCGCCAACGTATGAAGAAAGCCAGCGA
AACGGCGGCACCGGTGCTGGTGCCTATGGCTATCCACAAGGAGGAGGTGC
TCCGCCCAGCCAGAATCAGTATTACGGCATGATCAGCCACCAGCAACAGC
AGATGCCCTTCAGCGGGCAGCCCAACTACGGTATGACACATGGCAGTGGC
TTCGGACTTGCTGGTCCCAGTACGTCGGCAGGAGCAGCTGCAGCACAGGT
CCTTCACTTGGACTCACGGGCCGAGGTGAGGACAAATTCCAACGGAAATG
TCGTCATTCCGCCTCCTCCGCCGGGCTGCCTGCCCACACCGGCTCAGTGG
GCGGCCATGCAGGGTCAGCCTGTGGTTCTCAAGCAAAAAAAGCGTTCCTT
TTTTGCAAGCTTTCTAGACCAT

FMO11890.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG34125-RA 668 CG34125-RA 88..540 2..454 2250 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4965881..4966271 64..454 1940 99.7 Plus
2L 23513712 2L 4965760..4965822 2..64 315 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:20:00 has no hits.

FMO11890.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:49 Download gff for FMO11890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34125-RA 66..525 1..462 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:47 Download gff for FMO11890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34125-RA 87..546 1..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:51 Download gff for FMO11890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34125-RA 87..546 1..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:51 Download gff for FMO11890.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4965759..4965822 1..64 98 -> Plus
2L 4965882..4966277 65..462 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:47 Download gff for FMO11890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4965759..4965822 1..64 98 -> Plus
arm_2L 4965882..4966277 65..462 98   Plus