FMO11892.5prime Sequence
791 bp (791 high quality bases) assembled on 2012-06-25
> FMO11892.5prime
TTTTGCAGTGCAGATGCGAAGAGGTGACGAATCCTATGCCGGTGCCCTCC
GTTCGGCGCTGGATGGGGTCGGCCAGGTGGAAATTGACACCCAGGAAGGT
CGAGTGATAATCCAAACCCAACGACCTTGGTCAGAGATTCAGGACAAGAT
AGAAGCCACAGGTGTCCGGGCCGTACTCTCCGGATTCGGCGGACAGTCGG
CGGTGGCCCTTATTAACACAACAGGAAGTGTAGTGGACAAGACACCAATC
CAGGGAGTGGTTCGGTTTACCACCATTACCGCAGACAAGAAGCCTGGAGT
GGTTGTGGATGGCGTTGTGGACGGTCTATCGCCTGGACTGCACGGATTAC
ATATTCACGAGAGTGGTGACACTTCCGCAGGTTGCTCGTCGGTCGGAGAA
CACTACAATCCCCGCCAGTCGCCACATGGAAGCCCTGCAGCTGGGGCAGA
GGAGCGGCACGCCGGAGATCTTGGCAACATCCGAGCGGATGAAAACGGCA
GGGCCACCTTTAGATTTGTGGATCCAGTGCTAGAGGTCTGGGACATAATC
GGAAGGGCTGTCGTCCTAACAGCCAATGCCGATGACCTGGGACGCGGGGG
CAATGATCAGAGCCTGATTGACGGCAACTCTGGGGAAAGGATTGCGTGTG
GTATAATTGCTCGTTCGGCGGGCATCTTGTAAAACTTTAAGAGAATCTGT
GCATGTGATGGGGTCACACTTTGGGATGAACGCAATTAAGCCACTGGCTG
GCAAGGAGCGCTCACAAAAGCTGGCAAGCTTTCTAGACCAT
FMO11892.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccs-RB | 890 | CG17753-RB | 72..842 | 2..773 | 3790 | 99.5 | Plus |
| Ccs-RC | 959 | CG17753-RC | 64..824 | 12..773 | 3740 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10121814..10122452 | 640..2 | 3165 | 99.7 | Minus |
| 2R | 25286936 | 2R | 10121621..10121755 | 773..638 | 615 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:20:08 has no hits.
FMO11892.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:51 Download gff for
FMO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCS-RB | 59..837 | 1..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:51 Download gff for
FMO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccs-RB | 71..849 | 1..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:54 Download gff for
FMO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccs-RB | 71..849 | 1..781 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:54 Download gff for
FMO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10121614..10121753 | 640..781 | 96 | <- | Minus |
| 2R | 10121815..10122452 | 1..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:51 Download gff for
FMO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6009119..6009258 | 640..781 | 96 | <- | Minus |
| arm_2R | 6009320..6009957 | 1..639 | 99 | | Minus |
