FMO11896.5prime Sequence
1005 bp (733 high quality bases) assembled on 2012-06-25
> FMO11896.5prime
CTTTTCTTGGTCCTGCAGGTATTATCCTGCCACGGCGAGTTCTTCAGTTC
CACCTCGGGCCTGGCAAAGCTGTTCGAAACGGAGGTCGTCCTCCTGGCAG
AGCTGCAAAATTATGTGAATGAAATTAATCAGCACGCTGAGGCGCTACAG
AGTGAGATCGATGCCATCCGCGTGGAGCACCTGAATGCCGCCGATGGAAT
CGATGACTACCTCAACAATCCGGTGAACGCGTTCCGGCTGATAAAACGCC
TTCACAGCGATTGGGAAACCTTCGAGGGCAGTGTTACGGCGGATTCGAGT
CGCTCAAACTATCTAGATACCATGGCGAGTCTTAAGGAGAATCTGAGCTT
TCCTTCTCAGGACGATTTTGTGGGATCGGCGATAGCTCTTACGCGACTTC
AGCACACTTATCAATTGGATGTGGCTGAGCTGGCCAGTGGAATCCTGAAT
GGCGTTTAAATATGGTACGGCCATGTCGTGGCAGGATTGTTTTGTCCTTG
GCCAGCACCTGTATGCCCTGCGAGATTACAACCACACGGTGCCATGGCTG
CAGCAGTCGATGCAGTTTGCTCGGAGAACAGTCCTACGGGTCGGAGTCCG
CATCCCTAGACTTTATGGAGGCAGTGGTGGAATATCATCGCGAGATGGGT
GCCCACGAAGTGCCCTGAGTCTGGTGAACCATGTGCTTTCCATACAACCG
GACCAAAGAGTCACCCTTCTGGAGGCTCGTCAGCACCGGAGGAGCTATCA
CGGATGGGGACAAGACGGGGTGCTTCCCTTGACAGCCCGAAGACCTGGAG
ACTACCATGAGTCCCGGGAGTTTCGTATGCACGAGCAGTGTGTCGAGGCG
AGTTGGCACCCTTCCATCCAGCAAAGAAATCTTAGTGTCGCTAAGGAGAG
TCCTTGGGCTACGCCCATTTAGTGAGGACTCCACTGGACCCCTGTGTGCA
ATTGCATCTGTATTGCTCCAAGACTCGACTCCTTCGAAAACGCTTAGGCT
ATGAT
FMO11896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaMP-RA | 1882 | CG9726-RA | 87..1102 | 1..991 | 4205 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30492834..30493260 | 885..465 | 1560 | 95.3 | Minus |
| 3R | 32079331 | 3R | 30493852..30494008 | 307..151 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 30495916..30496067 | 152..1 | 745 | 99.3 | Minus |
| 3R | 32079331 | 3R | 30493632..30493780 | 456..308 | 730 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:19:39 has no hits.
FMO11896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-25 14:50:45 Download gff for
FMO11896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 84..1082 | 1..977 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:47:32 Download gff for
FMO11896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 87..1085 | 1..977 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:54:40 Download gff for
FMO11896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaMP-RA | 87..1085 | 1..977 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:54:40 Download gff for
FMO11896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30495916..30496067 | 1..152 | 99 | | Minus |
| 3R | 30492725..30493259 | 466..977 | 93 | <- | Minus |
| 3R | 30493624..30493780 | 308..465 | 98 | <- | Minus |
| 3R | 30493852..30494006 | 153..307 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:47:32 Download gff for
FMO11896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26318447..26318981 | 466..977 | 93 | <- | Minus |
| arm_3R | 26319346..26319502 | 308..465 | 98 | <- | Minus |
| arm_3R | 26319574..26319728 | 153..307 | 100 | <- | Minus |
| arm_3R | 26321638..26321789 | 1..152 | 99 | | Minus |
