FMO11904.5prime Sequence
573 bp (573 high quality bases) assembled on 2012-06-21
> FMO11904.5prime
CAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGCGCAGTCCC
AACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCATCGCCCGA
GCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCATCCCGACA
AGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGTTAAAGGAG
GCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTACGACAAGTG
GCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGGCATGAAGG
AGCATGTCGGTCAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGC
ATGCTGCCCGAGACCGGTGGAGCATCTGCCCAGGGACCTGGAACCGGTGC
AGGATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACC
GGCGGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGC
GAGTGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGA
GATCGCAAGCTTTTCTAGACCAT
FMO11904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jdp-RB | 1921 | CG2239-RB | 101..646 | 9..554 | 2715 | 99.8 | Plus |
| jdp-RC | 663 | CG2239-RC | 101..406 | 9..314 | 1530 | 100 | Plus |
| jdp-RA | 1960 | CG2239-RA | 101..406 | 9..314 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30518334..30518575 | 554..313 | 1195 | 99.6 | Minus |
| 3R | 32079331 | 3R | 30519647..30519765 | 314..196 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 30523227..30523330 | 198..95 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 30526243..30526329 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:30 has no hits.
FMO11904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:51 Download gff for
FMO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RB | 95..652 | 1..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:46 Download gff for
FMO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RB | 93..650 | 1..559 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:20 Download gff for
FMO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jdp-RB | 93..650 | 1..559 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:20 Download gff for
FMO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30518330..30518573 | 315..559 | 98 | <- | Minus |
| 3R | 30519647..30519763 | 198..314 | 100 | <- | Minus |
| 3R | 30523228..30523329 | 96..197 | 100 | <- | Minus |
| 3R | 30526243..30526333 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:46 Download gff for
FMO11904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26344052..26344295 | 315..559 | 98 | <- | Minus |
| arm_3R | 26345369..26345485 | 198..314 | 100 | <- | Minus |
| arm_3R | 26348950..26349051 | 96..197 | 100 | <- | Minus |
| arm_3R | 26351965..26352055 | 1..95 | 95 | | Minus |
