FMO11908.5prime Sequence
656 bp (656 high quality bases) assembled on 2012-06-21
> FMO11908.5prime
CAGTCGACATGTCGGTGGCCGGGCTTCGACAATGTCTGCTGCTGTGGAGC
GTCGACTACTGGAACTTGGAAGTCATGGCGGACAATGTCTTCAAGTCGCA
CGATATCGGGCTGCGGGCGCAGAAGAAGATCCTCTCACGCATGGCCACAA
AAAACATCGCCAAGACCTTCATCGATGGCACGACGGCGTCGCTGCTGGAC
AACCTCTACAGGCTCTGCAAGATGCACACGGGGAACAAGGCCAAGGCGGA
GAAGCTGATCAAGAACATCATCAAGATTGTGATCAAGATCGGTGTGCTCC
ACCGGAACAATCAGTTCAGCGACGAGGAGCTGCAGAAGGCGGAGCTCTTT
AAGAGAAAGTTTCAAAACACGCAGCTGTCCATCATATCATTCTACGAAGT
GGACTTCACGTTCGACCTGCCGTACCTGCAAAAGTCAATAGCCGAATCGC
AAGTGGCGCTGAAGTCGATTGTGCAGCCGCATCTCACAGAAAAGTCGCTG
GGCCGCATCGACGAGGTGTTCGATTTCTTCGGCGAGGAGGCGCTGCTGGA
GACGGCTTTCCGACCAGATTCCCCCTACCGCGAGGTGATGGGAAAGATTG
TGGCGGACATAAACGCAGCCATGGAAACGGGAGATATCGCAAGCTTTCTA
GACCAT
FMO11908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4091-RC | 1950 | CG4091-RC | 294..931 | 1..638 | 3160 | 99.7 | Plus |
| CG4091-RB | 1857 | CG4091-RB | 271..838 | 71..638 | 2840 | 100 | Plus |
| CG4091-RA | 1881 | CG4091-RA | 295..862 | 71..638 | 2840 | 100 | Plus |
| CG4091-RB | 1857 | CG4091-RB | 1..62 | 11..72 | 310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23700298..23700592 | 365..71 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 23699968..23700247 | 638..359 | 1370 | 99.3 | Minus |
| 2R | 25286936 | 2R | 23700801..23700871 | 72..2 | 325 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:37 has no hits.
FMO11908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:53 Download gff for
FMO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RC | 289..926 | 1..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:50 Download gff for
FMO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RC | 294..931 | 1..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:23 Download gff for
FMO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RC | 294..931 | 1..638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:23 Download gff for
FMO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23699968..23700240 | 366..638 | 100 | <- | Minus |
| 2R | 23700298..23700590 | 73..365 | 100 | <- | Minus |
| 2R | 23700801..23700871 | 1..72 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:50 Download gff for
FMO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19587491..19587763 | 366..638 | 100 | <- | Minus |
| arm_2R | 19587821..19588113 | 73..365 | 100 | <- | Minus |
| arm_2R | 19588324..19588394 | 1..72 | 95 | | Minus |
