FMO11911.5prime Sequence
1176 bp (1038 high quality bases) assembled on 2012-06-21
> FMO11911.5prime
CAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATGGAAATTCT
TCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACAATGTCCGG
CGACAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGCAGGCGTTG
CCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTGAGGGATAT
GGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGCTCCAATTC
CAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTCTAATATCA
GCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGAACGATGGA
AATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTGGCTCCACA
CGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACATAATGCCCC
GGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCAGTTCCGGC
CGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTATAGATCATC
GAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAACAGAAGACA
TGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATTATAGGCTG
GAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAGAATATAGC
TGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGC
GTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGACTGCGTGCCGAGG
AGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTG
GAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAAGATCCGTGC
CACCGAGATCGAGGCACCGGCACTGCGGGAAGAAGCCGCCCGACTGCGTG
TCCTGTGTGACAGCAGGCCAATGACCTCCATCGCACCGAGGAACAGTTGA
GCTGGCGCCGCGACCAAATCGGCGTCCTGCACAGGAGCACCGAGGAGCAA
GCTACAGGCACTGCGCCGCCCCCGAACAGGAAAGAGTCCACCGAGGACCT
GATGCTGACCTGGGCCGGGAACTGCACGTGCTCCCCAGGAGAGTGTATCC
CGTAATGTCGACCACACTCGCCCGGG
FMO11911.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RL | 2735 | CG33991-RL | 741..1911 | 7..1172 | 5350 | 97.8 | Plus |
nuf-RA | 2696 | CG33991-RA | 741..1911 | 7..1172 | 5350 | 97.8 | Plus |
nuf-RC | 3446 | CG33991-RC | 741..1911 | 7..1172 | 5350 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14200162..14200447 | 139..424 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 14230661..14231029 | 787..1152 | 1185 | 94.1 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 647..782 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14199966..14200100 | 7..141 | 675 | 100 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 531..647 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14200739..14200807 | 425..493 | 345 | 100 | Plus |
3L | 28110227 | 3L | 14212191..14212232 | 491..532 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:21 has no hits.
FMO11911.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:49 Download gff for
FMO11911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 731..1886 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:39 Download gff for
FMO11911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1890 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:14 Download gff for
FMO11911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1890 | 1..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:14 Download gff for
FMO11911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14213089..14213203 | 533..647 | 100 | -> | Plus |
3L | 14230176..14230310 | 648..782 | 100 | -> | Plus |
3L | 14199960..14200100 | 1..141 | 97 | -> | Plus |
3L | 14200165..14200447 | 142..424 | 100 | -> | Plus |
3L | 14200739..14200807 | 425..493 | 100 | -> | Plus |
3L | 14212194..14212232 | 494..532 | 100 | -> | Plus |
3L | 14230656..14231029 | 783..1152 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:39 Download gff for
FMO11911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14223276..14223410 | 648..782 | 100 | -> | Plus |
arm_3L | 14193060..14193200 | 1..141 | 97 | -> | Plus |
arm_3L | 14193265..14193547 | 142..424 | 100 | -> | Plus |
arm_3L | 14193839..14193907 | 425..493 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 494..532 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 533..647 | 100 | -> | Plus |
arm_3L | 14223756..14224129 | 783..1152 | 94 | | Plus |