Clone FMO11911 Report

Search the DGRC for FMO11911

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:11
Vector:pMK33-CFH-BD
Associated Gene/Transcriptnuf-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11911.5prime Sequence

1176 bp (1038 high quality bases) assembled on 2012-06-21

> FMO11911.5prime
CAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATGGAAATTCT
TCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACAATGTCCGG
CGACAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGCAGGCGTTG
CCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTGAGGGATAT
GGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGCTCCAATTC
CAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTCTAATATCA
GCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGAACGATGGA
AATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTGGCTCCACA
CGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACATAATGCCCC
GGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCAGTTCCGGC
CGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTATAGATCATC
GAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAACAGAAGACA
TGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATTATAGGCTG
GAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAGAATATAGC
TGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGC
GTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGACTGCGTGCCGAGG
AGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTG
GAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAAGATCCGTGC
CACCGAGATCGAGGCACCGGCACTGCGGGAAGAAGCCGCCCGACTGCGTG
TCCTGTGTGACAGCAGGCCAATGACCTCCATCGCACCGAGGAACAGTTGA
GCTGGCGCCGCGACCAAATCGGCGTCCTGCACAGGAGCACCGAGGAGCAA
GCTACAGGCACTGCGCCGCCCCCGAACAGGAAAGAGTCCACCGAGGACCT
GATGCTGACCTGGGCCGGGAACTGCACGTGCTCCCCAGGAGAGTGTATCC
CGTAATGTCGACCACACTCGCCCGGG

FMO11911.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RL 2735 CG33991-RL 741..1911 7..1172 5350 97.8 Plus
nuf-RA 2696 CG33991-RA 741..1911 7..1172 5350 97.8 Plus
nuf-RC 3446 CG33991-RC 741..1911 7..1172 5350 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14200162..14200447 139..424 1430 100 Plus
3L 28110227 3L 14230661..14231029 787..1152 1185 94.1 Plus
3L 28110227 3L 14230175..14230310 647..782 680 100 Plus
3L 28110227 3L 14199966..14200100 7..141 675 100 Plus
3L 28110227 3L 14213087..14213203 531..647 585 100 Plus
3L 28110227 3L 14200739..14200807 425..493 345 100 Plus
3L 28110227 3L 14212191..14212232 491..532 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:08:21 has no hits.

FMO11911.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:49 Download gff for FMO11911.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RA 731..1886 1..1152 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:39 Download gff for FMO11911.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1890 1..1152 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:14 Download gff for FMO11911.5prime
Subject Subject Range Query Range Percent Splice Strand
nuf-RC 735..1890 1..1152 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:14 Download gff for FMO11911.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14213089..14213203 533..647 100 -> Plus
3L 14230176..14230310 648..782 100 -> Plus
3L 14199960..14200100 1..141 97 -> Plus
3L 14200165..14200447 142..424 100 -> Plus
3L 14200739..14200807 425..493 100 -> Plus
3L 14212194..14212232 494..532 100 -> Plus
3L 14230656..14231029 783..1152 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:39 Download gff for FMO11911.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14223276..14223410 648..782 100 -> Plus
arm_3L 14193060..14193200 1..141 97 -> Plus
arm_3L 14193265..14193547 142..424 100 -> Plus
arm_3L 14193839..14193907 425..493 100 -> Plus
arm_3L 14205294..14205332 494..532 100 -> Plus
arm_3L 14206189..14206303 533..647 100 -> Plus
arm_3L 14223756..14224129 783..1152 94   Plus