FMO11913.5prime Sequence
1131 bp (992 high quality bases) assembled on 2012-06-21
> FMO11913.5prime
CAGTCGACATGGGCGACTTCGATCTGAATGTGGACAGCTTGATACAGCGG
CTGCTGGAGATGCGCAGCTGCCGAACGGGCAAACAGGTCCAGATGACGGA
GGCGGAGGTGCGTGGCCTCTGTCTCAAGTCGCGCGAGATCTTCTTGCAAC
AGCCCATCCTGCTGGAACTGGAGGCACCGCTGATCATCTGCGGCGACATC
CACGGCCAGTACACAGACCTGTTGCGCCTGTTCGAGTACGGCGGATTCCC
TCCGGCTGCCAACTACTTGTTCCTCGGCGACTACGTCGATCGGGGCAAGC
AGTCCCTGGAGACCATCTGTCTGCTGCTGGCCTACAAGATCAAATATCCG
GAGAACTTCTTCTTGTTGCGCGGCAACCACGAGTGCGCCAGTATTAATAG
GATTTACGGCTTCTACGATGAGTGCAAGCGCCGATACAATGTCAAACTGT
GGAAGACTTTCACAGATTGCTTCAACTGTCTGCCGGTAGCCGCCATTATT
GACGAAAAGATCTTCTGCTGCCACGGCGGCCTCAGTCCCGATCTTCAGGG
CATGGAGCAGATCCGTCGCCTAATGCGACCCACAGATGTGCCGGATACCG
GGTTACTGTGCGATCTTCTGTGGAGTGATCCCGACAAGGATGTTCAGGGT
TGGGGCGAGAATGATCGCGGTGTGAGCTTCACCTTCGGTGTGGATGTGGT
CTCCAAGTTTTTGAACCGCCACGAGCTGGACTTGATCTGCCGTGCACATC
AGGTTGTGGAGGATGGCTATGAGTTCTTTGCGCGTCGGCAACTGGTCACG
TTGTTCTCGGCGCCCAATTACTGTGGAGAGTTCGACAATGCCGGCGGAAT
GATGACCGTGGACGACACGCTGATGTGCTCATTCCAGATCCTGAAACCAT
CCGAGAAGATGCCAGTATCTGTACAGCGGAATGAACTCGTCGCGACCCAC
AACACCGCAGCGCACCGCCCCCAATGCTTGCGACCAACAGGTATGTGAGC
AAGCTTTTCTAGACCATTCGTTTGGCGCCGCCGGGCCCTGGTAAGGGGGC
CAATCATAATCGTAATCATATTCATAATCTCACTAGCCTATGAAATCCTG
ACACGACAGAGGCTGGAATCTCCCCAATAAT
FMO11913.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flw-RC | 3883 | CG2096-RC | 553..1534 | 9..989 | 4810 | 99.5 | Plus |
| flw-RB | 2131 | CG2096-RB | 553..1534 | 9..989 | 4810 | 99.5 | Plus |
| flw-RA | 2524 | CG2096-RA | 998..1927 | 61..989 | 4550 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10406353..10406701 | 61..409 | 1745 | 100 | Plus |
| X | 23542271 | X | 10406761..10407107 | 408..754 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 12424792..12425574 | 908..126 | 1725 | 81.4 | Minus |
| X | 23542271 | X | 15359441..15360262 | 908..87 | 1395 | 78 | Minus |
| 3R | 32079331 | 3R | 24518898..24519192 | 115..409 | 755 | 83.7 | Plus |
| X | 23542271 | X | 10407164..10407300 | 751..887 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 24519597..24519868 | 411..682 | 535 | 79.8 | Plus |
| 2R | 25286936 | 2R | 17955968..17956347 | 538..159 | 415 | 73.9 | Minus |
| X | 23542271 | X | 10407363..10407468 | 885..989 | 375 | 94.4 | Plus |
| X | 23542271 | X | 10386512..10386563 | 9..60 | 260 | 100 | Plus |
| 3R | 32079331 | 3R | 24519973..24520082 | 729..838 | 235 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:50 has no hits.
FMO11913.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:56 Download gff for
FMO11913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RB | 580..1561 | 9..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:59 Download gff for
FMO11913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RB | 553..1534 | 9..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:28 Download gff for
FMO11913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RB | 553..1534 | 9..989 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:28 Download gff for
FMO11913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10386512..10386563 | 9..60 | 100 | -> | Plus |
| X | 10406353..10406700 | 61..408 | 100 | -> | Plus |
| X | 10406762..10407105 | 409..752 | 100 | -> | Plus |
| X | 10407166..10407300 | 753..887 | 100 | -> | Plus |
| X | 10407366..10407468 | 888..989 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:59 Download gff for
FMO11913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10280545..10280596 | 9..60 | 100 | -> | Plus |
| arm_X | 10300386..10300733 | 61..408 | 100 | -> | Plus |
| arm_X | 10300795..10301138 | 409..752 | 100 | -> | Plus |
| arm_X | 10301199..10301333 | 753..887 | 100 | -> | Plus |
| arm_X | 10301399..10301501 | 888..989 | 95 | | Plus |
