FMO11915.5prime Sequence
1165 bp (1041 high quality bases) assembled on 2012-06-21
> FMO11915.5prime
CAGTCGACATGGATGCCAAGGAGTTTCGGGAATTCGGCAAGGCCGCCATT
GACTACATAGCCGACTATCTGGAGAATATTCGGGATGACGACGTACTGCC
CAATGTGGAGCCAGGCTATCTGTTGGACCTGCTGCCCACAGAGATGCCGG
AAGAGCCCGAAGCGTGGAAGGATGTCCTCGGCGACATTAGTCGCGTCATC
AAGCCGGGACTGACCCACTGGCAGTCGCCTCACATGCATGCCTACTACCC
CACCAGCACCTCGTATCCCTCCATTGTGGGCGAGATGCTGGCCAGCGGGT
TCGGCGTCATCGGATTCAGCTGGATCTGCAGTCCCGCCTGCACAGAACTG
GAGGTGGTGGTCATGGACTGGCTGGCCAAGTTCCTGAAGCTGCCCGCACA
CTTCCAGCACGCCAGCGATGGACCAGGAGGCGGGGTGATCCAGGGATCAG
CTAGCGAGGCTGTGTTGGTGGCTGTCCTAGCTGCCAGGGAACAAGCTGTG
GCCAACTACAGGGAATCGCATCCGGAGCTGAGCGAAAGTGAGGTGCGTGG
CCGCTTGGTGGCCTACTCCTCGGACCAGAGTAACAGCTGCATTGAGAAGG
CTGGAGTCCTGGCTGCCATGCCGATTCGATTGCTGCCGGCTGGAGAGGAT
TTCGTACTTAGAGGCGATACACTGAGAGGAGCCATCGAGGAGGACGTGGC
AGCGGGCAGGATTCCGGTGATCTGCGTTGCCACTCTGGGCACCACGGGCA
CTTGTGCCTATGACGACATTGAATCCCTGTCCGCTGTCTGCGAGGAATTC
AAGGTGTGGCTCCATGTTGATGCCGCGTATGCCGGTGGAGCCTTTGCTCT
GGAGGAATGTTCGGATTTGCGAAAGGGATTGGATCGCGTGACTCGCTAAA
CTTCAACCTGCACAGTTCATGCTGGTCAACTTCGATTGCTCGGCCATGTG
GCTAAGGATGCCAACAGTGGTCGACAGCTTCAATGTGATCGCATTCTACC
TGAAGCACAAGCCACGAGGGTCAGTCGCAATTCCTGACTTCCGTATTGGC
AAATCCCCTGGGTCGCCCGCTTCCGAGTGTAAAGTCTGGATCCATTCCGC
ACACTCTGGGAACCCGAGGGATGGCTAACATGTTGCCGCAAGCCCACTCC
AGGTTGCCCAACGTG
FMO11915.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RA | 1792 | CG10501-RA | 161..1280 | 9..1122 | 5170 | 98.2 | Plus |
| amd-RB | 1749 | CG10501-RB | 305..1237 | 196..1122 | 3665 | 93.9 | Plus |
| Ddc-RD | 2797 | CG10697-RD | 1258..1468 | 195..405 | 230 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19112793..19113553 | 323..1077 | 3260 | 97.9 | Plus |
| 2L | 23513712 | 2L | 19112001..19112315 | 9..323 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 19117812..19118022 | 405..195 | 230 | 73.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:52 has no hits.
FMO11915.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:56 Download gff for
FMO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 151..1283 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:01 Download gff for
FMO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 154..1286 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:29 Download gff for
FMO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 154..1286 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:29 Download gff for
FMO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19111994..19112315 | 1..323 | 99 | -> | Plus |
| 2L | 19112794..19113604 | 324..1128 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:01 Download gff for
FMO11915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19111994..19112315 | 1..323 | 99 | -> | Plus |
| arm_2L | 19112794..19113604 | 324..1128 | 97 | | Plus |
