FMO11916.5prime Sequence
1116 bp (996 high quality bases) assembled on 2012-06-21
> FMO11916.5prime
CAGTCGACATGTACAGAATAGCTGCCCTTGTGCGGGATCGCGCCTGTCTC
TTCACGTGCCAGCAGGCCTCGCAGAACCTGCAGCAGCAGCAGCCCCGCTT
TTATAGTGCGCCAGGTCGCAGGGCCGGCTTCTTCTCGCAGTTCTTCGACA
ACATGAAGGCGGAGATGGATAAGAACAAGGAGATCAAGGACAATATCCGA
AAGTTCCGTGAGGAGGCCCAGAAGCTGGAAGAATCGGATGCCCTGAAATC
GGCGCGGCAAAAGTTTAACATTGTCGAATCGGAGGCGCAAAAGTCGTCTA
GCATGCTAAAGGAGCAGCTGGGCGCCATCAAGGAGCGCGTAGGCGATGTT
CTGGAGGACGCCAGCAAATCCCACCTGGCCAAAAAGGTTACCGAGGAGCT
CTCGAAGAAGGCTAGGGGGGTCAGCGACACGATCTCCGACACCAGTGGCA
AGCTGGGCCAGACCAGCGCATTCCAGGCTATCTCTAACACGACGACGACC
ATCAAGAAGGAGATGGACAGCGCGAGCATAGAGAATCGTGTCTATCGTGC
TCCTGCCAAGTTGCGAAAGCGCGTCCAGCTCGTCATGAGCGATAGTGATC
GCGTTGTGGAGCCCAACACGGAAGCCACTGGTATGGAGCTGCACAAGGAC
TCCAAGTTCTACGAGTCGTGGGAGAACTTCAAGAACAACAATACCTACGT
GAACAAGGTGCTTGACTGGAAGGTTAAATACGACGAGTCCGAGAACCCTG
TTATTCGTGCCTCCCGCCTGCTGACCGATAAAGTGTCCGACGTCATGGGT
GGACTCTTTTCAAAGACAGAGCTTTCGGAAACGATGACGGAGCTGGTGAA
AATCGATCCGAGCTTTGATCAGAGGATTTCCTCCGCGATTGCGAAACGGA
CATCATTCCAAATATTCTGGAATCGATTGTCCGTGGGGATCTGGAGATTC
TGAAGATTGGTGCTTTGAGAGCACTTCAATATTATTCGCAATCCATTACA
GCTAAGAGCCAGCGTGGTACTTGACTCCAGATCCTCGACATCGAGACAAT
GACCTGCAATGGCCAAGTTATGGAGCAGGGCCGGTACTGAATATCAGTCA
AGCCAGCATTAGGCGT
FMO11916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-RE | 2474 | CG11779-RE | 151..1253 | 8..1096 | 4990 | 97.7 | Plus |
| CG11779-RB | 2679 | CG11779-RB | 356..1458 | 8..1096 | 4990 | 97.7 | Plus |
| CG11779-RA | 2281 | CG11779-RA | 263..1368 | 5..1096 | 4975 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19155863..19156406 | 632..89 | 2720 | 100 | Minus |
| 3R | 32079331 | 3R | 19155450..19155798 | 976..630 | 1645 | 99.4 | Minus |
| 3R | 32079331 | 3R | 19156466..19156547 | 92..11 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:56 has no hits.
FMO11916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:57 Download gff for
FMO11916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RB | 353..1326 | 1..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:03 Download gff for
FMO11916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RB | 353..1326 | 1..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:30 Download gff for
FMO11916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RB | 353..1326 | 1..976 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:30 Download gff for
FMO11916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19155450..19155797 | 631..976 | 99 | <- | Minus |
| 3R | 19155865..19156402 | 93..630 | 100 | <- | Minus |
| 3R | 19156466..19156553 | 1..92 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:03 Download gff for
FMO11916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14981172..14981519 | 631..976 | 99 | <- | Minus |
| arm_3R | 14981587..14982124 | 93..630 | 100 | <- | Minus |
| arm_3R | 14982188..14982275 | 1..92 | 94 | | Minus |
