FMO11917.5prime Sequence
1140 bp (1045 high quality bases) assembled on 2012-06-21
> FMO11917.5prime
CAGTCGACATGCATTGCGGCCGCGTATTGATCAAGTATTTACAATTTGAC
ATATTGGTAATTTTGGCAACTATAAGGCTTGGGAATGCACATTTTAATGG
ACCACGCAGTCGGGAAAGAAATTTAAGCAATAGCAATGGAGTAAAAACTG
AAGAAGCATCACATATCGTAAATCCCAGTGGTGTTAGAACAGTTGGTGAA
GTGTTTGTGCCAAAAACCTTTTCACTTAACTCACAGGAACCGACATGCGA
ACAGCTCCGCGCCATGTGGATTTTTTCAAAGAGGCAATCTCGAGCTGCAG
AAATAACCAATGAAATACCAACATATAGGGATCCCTTCACATATAATGTT
TGGGAGCCTCTGTTTTTGAACTCTCGAATGCTGGGATCATTACGAATGAG
CGCAAGGGAAAAAGCCAGGTCACCTGTTTTTGGCCGTGTTCTCAATCGAG
AGCCAAATGGACCGCAGCGTATTCCATTTGAACACCATCGAAGATTGGGT
GAATTTGGATCAAGCGCTTCTGGTTTAAGTCACTCTCGTTATTATGGAGC
TGAAATGCGACCACAAACGGGAGCTTCCTCAATTCGTAGATCAAGCCAAA
ATCGGTATATGGGAATCCCAAATATTACTGGAAATAATCAAAAAGAAAGC
CAAAATTCAGTGGCTATACAAGGAAGCTTTCAAAAGCTCAAAGAGCTAAT
TTGGACTGAGAGAGCCAAGGAATTAACAGAGCAACGTCGAGATGAGGAGT
TGGCAGCGCGTTCTGCTGCCCTTAAAGAAATTGCTAACGGAAAAAACTTA
ATTTCAGATTATCACCATCAAGTCGGTAGCTTATCTGATTCTCCATTAAT
GGATGAAAATCGAAGTCCTGAAGAAAATAGATACCGAGATAGTGACGTAA
ATCGGAGTCAATTCTAAATGACCAAATTTCAAAAATAGTAATATGAACAA
AATGGAAATAGATCTGGGCTAAAGCAACAACGCGTCGCATTGGAATTCTT
CCCTACATAATAAGAGTTTCAAACTATACGACTAAAGCTATTTTTTGAGT
ACGAGCTGCGCATAATGCAGCAACTGAATAATCCGATGATCACGAGTGAT
CCTTCGTGTGGATTCAGAGCTACATTCGATTCGCATCAGA
FMO11917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32017-RD | 3875 | CG32017-RD | 502..1525 | 9..1026 | 4895 | 99 | Plus |
| CG32017-RC | 3542 | CG32017-RC | 169..1192 | 9..1026 | 4895 | 99 | Plus |
| CG32017-RB | 3812 | CG32017-RB | 439..1462 | 9..1026 | 4895 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1140956..1141367 | 800..389 | 2045 | 99.8 | Minus |
| 4 | 1348131 | 4 | 1143627..1143869 | 271..29 | 1215 | 100 | Minus |
| 4 | 1348131 | 4 | 1140666..1140901 | 1026..797 | 805 | 95.3 | Minus |
| 4 | 1348131 | 4 | 1143449..1143565 | 388..272 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:00 has no hits.
FMO11917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:58 Download gff for
FMO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RC | 425..1455 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:06 Download gff for
FMO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RB | 432..1462 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:32 Download gff for
FMO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32017-RB | 432..1462 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:32 Download gff for
FMO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1140666..1140901 | 797..1026 | 95 | <- | Minus |
| 4 | 1140960..1141367 | 389..796 | 100 | <- | Minus |
| 4 | 1143449..1143565 | 272..388 | 100 | <- | Minus |
| 4 | 1143627..1143868 | 30..271 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:06 Download gff for
FMO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1161292..1161527 | 797..1026 | 95 | <- | Minus |
| arm_4 | 1161586..1161993 | 389..796 | 100 | <- | Minus |
| arm_4 | 1164075..1164191 | 272..388 | 100 | <- | Minus |
| arm_4 | 1164253..1164494 | 30..271 | 100 | <- | Minus |
