FMO11920.5prime Sequence
677 bp (677 high quality bases) assembled on 2012-06-21
> FMO11920.5prime
CAGTCGACATGACAATGCTAGAAGGCATGACGTCGATTGACCTGGGCTCC
AGTCCCATGCAAGAAACCACTGGCGACATGAACGACGTCCTCCCCGATGA
GCTCATGGAGTCGCCGGAGGAAAGATACGAGCGCCTACTGCGTCGTGCCC
AAGTCGAGGATTTGACGGAGGTGTCCGGCATCGGCTGCCTTTACCAGAGC
GGCGTGGACCGCCTGGGTCGGCCTGTGATTGTGTTCTGCGGCAAATGGTT
CCCCGCCCAGAACATTGACCTGGAAAAGGCCTTGCTATATCTGATTAAGC
TACTGGATCCCATCGTTAAAGGAGACTATGTCATCTCGTACTTCCACACG
CTGACATCCACGAACAACTATCCATCGCTGCACTGGCTGCGTGAGGTCTA
CAGTGTGTTGCCTTACAAATACAAGAAGAACCTGAAGGCCTTCTATATCG
TGCACCCCACTTTCTGGACTAAGATGATGACCTGGTGGTTCACCACGTTC
ATGGCGCCTGCCATCAAGGCCAAGGTGCACTCGCTTCCGGGTGTGGAGCA
CCTGTACTCGGCCATCACCAAGGATCAGCTGGAAATTCCCGCCTACATCA
CCGAGTACGACATGGCGACCAATGGCCTGCATTACTTCAATCCTGTGCCG
ACTGCCTCGGCAAGCTTTCTAGACCAT
FMO11920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-RE | 2143 | CG18812-RE | 507..1157 | 9..659 | 3255 | 100 | Plus |
| CG18812-RA | 2143 | CG18812-RA | 507..1157 | 9..659 | 3255 | 100 | Plus |
| CG18812-RD | 1719 | CG18812-RD | 359..900 | 118..659 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7719376..7719574 | 617..419 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 7719842..7719998 | 279..123 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 7719641..7719782 | 418..277 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 7722034..7722149 | 124..9 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 7719265..7719307 | 659..617 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:11 has no hits.
FMO11920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:00 Download gff for
FMO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 495..1154 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:12 Download gff for
FMO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 498..1157 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:38 Download gff for
FMO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 498..1157 | 1..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:38 Download gff for
FMO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7719265..7719306 | 618..659 | 100 | <- | Minus |
| 2R | 7719376..7719574 | 419..617 | 100 | <- | Minus |
| 2R | 7719641..7719780 | 279..418 | 100 | <- | Minus |
| 2R | 7719843..7719996 | 125..278 | 100 | <- | Minus |
| 2R | 7722034..7722158 | 1..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:12 Download gff for
FMO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3606770..3606811 | 618..659 | 100 | <- | Minus |
| arm_2R | 3606881..3607079 | 419..617 | 100 | <- | Minus |
| arm_2R | 3607146..3607285 | 279..418 | 100 | <- | Minus |
| arm_2R | 3607348..3607501 | 125..278 | 100 | <- | Minus |
| arm_2R | 3609539..3609663 | 1..124 | 97 | | Minus |
