FMO11921.5prime Sequence
1165 bp (1005 high quality bases) assembled on 2012-06-21
> FMO11921.5prime
CAGTCGACATGTCTAAAACGCCGTCGTTCGACAAGGATCGCGATTACATA
GGCTTTGCCACGCTTCCAGAGCAAGTGCACCGGAAGTCGGTGAAGCGGGG
CTTCGAGTTCACCCTCATGGTGGTCGGCGAGTCCGGACTGGGCAAGTCCA
CGCTGATCAACAGTCTCTTTCTGGGCGATCTCTACAAGAACCGGCAGATG
CCCAATGTGGAGGAGCGCATCGAGAAGACGACGAAGGTGGAGAAGAAGAC
GATGGACATCGAGGAGCGGGGCGTCCGGCTCCGGCTGACGGTGGTGGACA
CCCCGGGATTCGGGGATGCCATCAACTGTGAGGACAGCTGGCGCGTCTGC
ACCCAGTACATCGACGAGCAGTTCCGCCAGTACTTCACCGACGAGAGCGG
CCTGAATCGCCGCAACATCCAGGACAATCGGGTGCACTGCTGCCTCTACT
TCGTGCCGCCATGGGGCCACAGCCTGCGACAGATGGACCTCGATTTGATA
CGGCGGCTGCACCGCAAGGTGAACATCGTGCTGGTGATCGGCAAGGCCGA
TTGCCTCAACAAGCAGGAGGTGCGCAAGCTGAAGGAGCGCATCCTGCAGG
ACCTGGAGGACAACCACATCCAGCTGTATCAGTTCCCCGAATGCGACTCC
GACGAGGACGACGACTTCAAGCAGCAGGACCGCGAACTGAAGGCCTCCAT
TCCGTTCGCCGTCGTCGGCAGCAACACCATTCTGGAGGTGGCCGGCAAGA
AGGTCCGAGGGCGCCAGTATCCGTGGGGCGTGGTAAACGTGGAGGATCCG
GAGCACAGCGACTTCATCAAGCTGCGCACCTTCTTGATATCCACGCACAT
GCAGGACCTCAAGGACACCACGCAGGACGTGCACTACGAGAACTTCCGGG
CGCAGTGCATCTCGCAGATTTCGCAGCACGCGCTGCGTGAGCCGCGGCAA
GTTGAGCGGGACTCCGATTTAGCTCGACCAATGGATTCCGACGCGGCCAT
CTCGGAAACGGACAGCTTGCTTCCTGCAAGGGACAGAGATAGGAGATGCC
AGGAATGCTCCCCCAGATGCCAGAAAGCTCAGCGAACCCTTCCCTATGGA
GATTAAAAAATGACCGCGGGATCGACACGTCCAAGCTTCTTCTAACTCAT
CTCATTTGGTCGCTG
FMO11921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sep4-RG | 2433 | CG9699-RG | 369..1492 | 7..1126 | 4995 | 97.2 | Plus |
| Sep4-RC | 2896 | CG9699-RC | 838..1955 | 13..1126 | 4965 | 97.2 | Plus |
| Sep4-RE | 2915 | CG9699-RE | 857..1974 | 13..1126 | 4965 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16686310..16686769 | 472..13 | 2300 | 100 | Minus |
| X | 23542271 | X | 16685507..16685913 | 876..470 | 2035 | 100 | Minus |
| X | 23542271 | X | 16685275..16685414 | 1015..873 | 460 | 94.4 | Minus |
| X | 23542271 | X | 21359566..21359675 | 75..184 | 340 | 87.3 | Plus |
| X | 23542271 | X | 21359805..21359880 | 248..323 | 200 | 84.2 | Plus |
| 2R | 25286936 | 2R | 8239094..8239270 | 722..898 | 195 | 74 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:14 has no hits.
FMO11921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:01 Download gff for
FMO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 345..1374 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:15 Download gff for
FMO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 364..1393 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:39 Download gff for
FMO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sep4-RG | 364..1393 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:39 Download gff for
FMO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16685256..16685411 | 876..1034 | 93 | <- | Minus |
| X | 16685508..16685910 | 473..875 | 100 | <- | Minus |
| X | 16686310..16686769 | 13..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:15 Download gff for
FMO11921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16579289..16579444 | 876..1034 | 93 | <- | Minus |
| arm_X | 16579541..16579943 | 473..875 | 100 | <- | Minus |
| arm_X | 16580343..16580802 | 13..472 | 100 | | Minus |
