Clone FMO11923 Report

Search the DGRC for FMO11923

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:23
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5550-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11923.5prime Sequence

765 bp (765 high quality bases) assembled on 2012-06-21

> FMO11923.5prime
CAGTCGACATGAAACCCATTTGCTTCGCACTCTGCGTATTTTCGCTAGGC
CTTTTCTATTTGGCCAGCGCTGAGATTGGTGAAAATGTGAAGATCCAGAC
GTACAAGAAGTATAGTTCATCCTGCAAGGAGTTGAACCCAAAGAAGAGCG
GTGTCCAGAAGATCCAAGTGGGCTCCGATGTAATCGAAGTGTACTGCGAT
GTGACAATCGCCGGAAAGGGCTGGCTGGTCGTCCAGCGAAGAGTCAGTGT
GGAGGAGAACTTCTACCGCAATTGGACCTCTTATCAGACGGGTTTCGGTG
ACCTTAAGGGTAACTTCTTCATCGGATTGAATAATCTGAACAAGATCTCG
TCCCTGCAACCCCAAGAGTTGTATATTGAGTTGGTGGACTTTGCTGGCGA
GAAGCGGTATGCCCACTACAGTGTGTTTCACGTGGGCAACGTGTACAGTA
ATTACCCGATAACCCAGCTGGGCGCGTACAGTGGAACCGCCGGAGACAGT
TTGAGCTATCATCTGTACCAACCTTTCAGCACCTTCGATAGGGATAACGA
CAATGCCACTATCAACTGTGCTGCCAGATATATGGGAGCCTGGTGGTACA
GAGAATGCCTTAGCAGCAATCTGAATGGTGCATATCTGGGTGGAAACCAC
ACCGATCCCGCGCTGTTTGGCTCTGGAATCGTTTGGGGGAGAATGGAAGG
GCTTCACATACAGCTACAAGACTGTTAACATTATGGTGCGACCAAAAGCA
AGCTTTCTAGACCAT

FMO11923.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5550-RA 926 CG5550-RA 26..763 9..747 3670 99.9 Plus
CG5550-RB 938 CG5550-RB 26..775 9..747 3540 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16816614..16817221 9..616 3040 100 Plus
2R 25286936 2R 16817281..16817414 613..747 625 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 03:08:46 has no hits.

FMO11923.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:22:55 Download gff for FMO11923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5550-RA 17..765 1..752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:40:57 Download gff for FMO11923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5550-RA 19..767 1..752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:27 Download gff for FMO11923.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5550-RA 19..767 1..752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:27 Download gff for FMO11923.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16816607..16817221 1..616 99 -> Plus
2R 16817285..16817418 617..752 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:40:57 Download gff for FMO11923.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12704112..12704726 1..616 99 -> Plus
arm_2R 12704790..12704923 617..752 97   Plus