FMO11927.5prime Sequence
1134 bp (1040 high quality bases) assembled on 2012-06-21
> FMO11927.5prime
CAGTCGACATGGAGACTTCTGCCACCACAAAGACAACCACGCTCACCACC
CCCGCCAAACTGTATGGCAAGGATCTGAGTGAGTACGATGATGTGGATGT
GGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAGATAACCATACTGGCCA
AAGAAGTGGATCCCGATGACAACTTCCTGCCGCCAGACCAGCGCAATAGC
TATGAGTGCACCAAGGAAGCCACCGGGCCTCTCAATCGCAAGCAGCTGAT
CGAGCACATCAATAAGCAGGCCATCGAGACCCCGGATCAGCCGGAGTTCG
AGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAAGTGGGTCCCACCGCCA
AGGGATGCCCGCGACATCGAGGCCGAAGAACAAATCGCCATTGACATGGG
CGAGGAGTACGAACACGCCCTTAACGATGCCACGCAGGAGGAGATCATCG
ATCTGGCCGCCATCCTCGGCTTCCACTCGATGATGAATCAGGACCAGTAC
CACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGGGCCTGGGATGGGATGG
CATTACGAAATCCACTCAGCAGAAGCTCTTCCCTATGGATCCGCCCAACA
ACACAGATGTGGAGGAATCCATCAAGCGGGTCAAGGACGATGACTCCAAG
CTGATTGACCTCAACTTGAACAACATTAAGAACATCTCGGACGAGAAACT
CGAGCAACTGTTTGCCGCACTGCCTCAGAACGAACATTTGGAAGTCCTCT
CGCTAACAAATGTGGGCCTCACCGACAAGACAGCCCTCCTGTTAGCCGCG
GCCATAGAGAAGAGCAAAACCCTGAGAGTATTAAATGTCGAGACCAACTT
TATCAGTCCGCCCGTGATTGTTAAGTTGGTGCAAGCCCTGCTCAAGTGCC
ACACCATCGAGGAGTTTAGGGCCTCCAATCAGCGGTCTGCGGTCTGGTCA
ACAAGATCGAGATGGAAATCACCGACTGGTTGAGAAGACTCGTCGCTGCT
GCGCTTGGCTGGCACCTGGATTTCACGAACGCCCCGCCACCGATGCCCGC
TCACCTGCACCGCCAACATTCGAAGAAAATCGTGTGTCAACGGCCTGGAA
CAGCGTTAAAGCAGTTTCTTAGACAATCGTTTGG
FMO11927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RA | 2537 | CG1539-RA | 295..1394 | 7..1106 | 5035 | 97.8 | Plus |
| tmod-RI | 3000 | CG1539-RI | 763..1857 | 12..1106 | 5010 | 97.8 | Plus |
| tmod-RL | 2662 | CG1539-RL | 425..1519 | 12..1106 | 5010 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 168..680 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572850 | 679..932 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 30571807..30571962 | 13..168 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 30572922..30573059 | 930..1063 | 260 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:29 has no hits.
FMO11927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:04 Download gff for
FMO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 298..1376 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:25 Download gff for
FMO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 290..1368 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:46 Download gff for
FMO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 290..1368 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:46 Download gff for
FMO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571807..30571961 | 13..167 | 100 | -> | Plus |
| 3R | 30572023..30572535 | 168..680 | 100 | -> | Plus |
| 3R | 30572599..30572850 | 681..932 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:25 Download gff for
FMO11927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26397529..26397683 | 13..167 | 100 | -> | Plus |
| arm_3R | 26397745..26398257 | 168..680 | 100 | -> | Plus |
| arm_3R | 26398321..26398572 | 681..932 | 100 | -> | Plus |
