FMO11928.5prime Sequence
1097 bp (1018 high quality bases) assembled on 2012-06-21
> FMO11928.5prime
CAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGCTGGAACGT
GCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAGGAGTTCCA
TGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGATGTGGACC
GTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCAAGGCAGAA
ATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAAGAGGGTCC
CGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGCTGTGATGA
ACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGATCCGCAACATGTTG
GATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACCTCAATGGG
TTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCTTACTTTCC
TGGATCTGACCGTGCAGCAAATCGAGCATCTCAACAAGACCTACGATGCC
AATGTTCCGCTGGTACTGATGAACTCCTTTAACACCGACGAGGATACCGA
GAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCACACCTTCA
ACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGCCGGTGGCC
AAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGGTATCCACCTGGACA
CGGTGACTTCTACGATACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCA
TCGAGGAGGGCCGCGAGTATTGTTTCTTGTCCAACATCGATAACCTGGGC
GCCACCGTCGATCTGAACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGC
CACTACTCCAGTGTAGTTTGTCATGGAGGTCACCGACAGACCCGTGCTGA
CGTTAAGGGTGGTACTCTCATTCAAATGAAAACAGCTGCGCCTGTTGGAA
ATTGCTCAGTGCCACCAGAGCATGTGATGACTTTAAGTCGGTAGACCTCA
AGTTCTTTAACACCAACAACGATTGGCAACTTGCAGCCATTGATCGCGTT
TGCCTGACGTTACTACAATGAATATTTGTGAACACAGAGCCTGAATC
FMO11928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RE | 2686 | CG4347-RE | 254..1307 | 9..1051 | 4955 | 98.6 | Plus |
| UGP-RA | 2102 | CG4347-RA | 254..1313 | 9..1051 | 4885 | 98 | Plus |
| UGP-RD | 2093 | CG4347-RD | 322..1327 | 57..1051 | 4715 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352882..9353230 | 682..334 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 908..683 | 1070 | 99.1 | Minus |
| 3L | 28110227 | 3L | 9353888..9354074 | 243..57 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 335..242 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 9352424..9352545 | 1020..906 | 300 | 92.6 | Minus |
| 3L | 28110227 | 3L | 9357581..9357630 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:33 has no hits.
FMO11928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:05 Download gff for
FMO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 253..1328 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:27 Download gff for
FMO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 245..1320 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:48 Download gff for
FMO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 245..1320 | 1..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:48 Download gff for
FMO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9352418..9352543 | 908..1026 | 92 | <- | Minus |
| 3L | 9352602..9352827 | 683..907 | 99 | <- | Minus |
| 3L | 9352882..9353228 | 336..682 | 100 | <- | Minus |
| 3L | 9353738..9353829 | 244..335 | 100 | <- | Minus |
| 3L | 9353888..9354074 | 57..243 | 100 | <- | Minus |
| 3L | 9357583..9357634 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:27 Download gff for
FMO11928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345518..9345643 | 908..1026 | 92 | <- | Minus |
| arm_3L | 9345702..9345927 | 683..907 | 99 | <- | Minus |
| arm_3L | 9345982..9346328 | 336..682 | 100 | <- | Minus |
| arm_3L | 9346838..9346929 | 244..335 | 100 | <- | Minus |
| arm_3L | 9346988..9347174 | 57..243 | 100 | <- | Minus |
| arm_3L | 9350683..9350734 | 1..56 | 92 | | Minus |
