FMO11933.5prime Sequence
1170 bp (1046 high quality bases) assembled on 2012-06-21
> FMO11933.5prime
CAGTCGACATGAGTAAGCTGGAAACGGATTCGGACAGTTCAGAGGAGTTT
TTCGATGCCGAGGACACTACGCCCAATCGCCATTCGACTTTGTGTCGAAA
GCTGCCGCCCGAGGTGGCCCAGGAGTTCATCTTTCCCGAGCCCGCCGTGA
GAGTGAATGCCGCCGCCTCATCCGACAGCGATGCTACGCCCATTGGCGCT
GGAACGCCCGCCACCCGGAGTCCCACTAATAGCCTGGGTGCCCGGCTAAA
GCCGCAGGATGCAGGGGTCTTCGTTGAGCCCAAGCCCGTGATAGGACCTT
TGGGTAGACAGCGCTTTCACGAACTACGTCAGTGCATGCAAAACGATGAA
GATGATAATCCAGGAAATACACTCACACCTGATTCTCAGAATAGCTCAAC
GGATGGCATTTTTACCAACCGTTCGACGCATCCGTTTAAGGTCATTGAGA
CAGATGCGATGAGCATACAGAGCATGACATCACTGGGTCGCGTGGGCCGA
ATCTTGGCGGGCAGCATTGATCCATCTGCTATAAGCATAGATCGCGAGTC
CCTGGCCTCGTTGAATGCGCAACAGCAGAAGCAGCAGGCGCAGCAGCAAC
AACAGGCGCAGCCTACATCGTCTACCAGCTCCAATACTCCACCGAGCGTT
GGAAACACCTCTTCCGGGATGAGCACGCCCAGGGTGTCGCCCAAGCATCA
GCAGAGTGGTAAGGAAGTAGCCGCCACCACGACAGGGATTCCTAGTGCCG
CATCCTCCGCGCAGAGCTCTGGTGTTGGCTCGATGGTTTGCAGGAACCAG
ATGTGATAGCAAGCACAAAGCTTGCCCAGTCTAAAACTACTGATTCCATC
ACCTCGTCGGGACCCGTGGCGCCACCGCGAAGAAGAAGAGTCTCGTATTG
CTCCATCAGTTCCTCAGATCAGTATAGTCTTCCTCCTGCGGACACGAGGA
CACTGATAGTGATACGCGGGTCTGTGAAGAGTGTGCCAGGGTCTTCAGCA
AAAGCTGCGGGATGACTTTGTCATGGAAGTTCGAGAGCCTCTCTTAACAT
GCCACTAGGTTCAGGCCTCCAAATATCACCATGACCTGGCTCCTCCCACC
AATACGGTGGGTTTCTCGCATCGGGCTTCGACCTCCGGCAGCATCTCCGT
CCGTGGCATTCACATGCAAT
FMO11933.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34133-RC | 4263 | CG34133-RC | 340..1487 | 5..1159 | 5180 | 97.5 | Plus |
| CG34133-RE | 4209 | CG34133-RE | 340..1487 | 5..1159 | 5180 | 97.5 | Plus |
| CG34133-RB | 3831 | CG34133-RB | 635..1397 | 390..1159 | 3270 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29871445..29871967 | 528..1049 | 2170 | 98.1 | Plus |
| 3R | 32079331 | 3R | 29869849..29870054 | 94..299 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 29871236..29871377 | 387..528 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 29871060..29871149 | 300..389 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 29869704..29869793 | 5..94 | 435 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:51 has no hits.
FMO11933.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:08 Download gff for
FMO11933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RC | 333..1484 | 1..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:37 Download gff for
FMO11933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RE | 338..1489 | 1..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:56 Download gff for
FMO11933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34133-RE | 338..1489 | 1..1162 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:56 Download gff for
FMO11933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29869702..29869793 | 1..94 | 96 | -> | Plus |
| 3R | 29869850..29870054 | 95..299 | 100 | -> | Plus |
| 3R | 29871060..29871149 | 300..389 | 100 | -> | Plus |
| 3R | 29871239..29871377 | 390..528 | 100 | -> | Plus |
| 3R | 29871446..29872029 | 529..1114 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:37 Download gff for
FMO11933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25695424..25695515 | 1..94 | 96 | -> | Plus |
| arm_3R | 25695572..25695776 | 95..299 | 100 | -> | Plus |
| arm_3R | 25696782..25696871 | 300..389 | 100 | -> | Plus |
| arm_3R | 25696961..25697099 | 390..528 | 100 | -> | Plus |
| arm_3R | 25697168..25697751 | 529..1114 | 96 | -> | Plus |
