FMO11934.5prime Sequence
1151 bp (1038 high quality bases) assembled on 2012-06-21
> FMO11934.5prime
CAGTCGACATGTTTGGCGGCGCGAAACCCAGCTTCGGAGCCACTCCGGCG
GCCACCAGCTTTGGCGGATTCAGCGGCACCACAACAACCACTCCGTTTGG
CCAGTCGGCATTTGGCAAACCCGCCGCACCGGCCTTTGGAAACACCTCCA
CCTTTGCCGCCCAACCCGCGCAGCAGTCACTGTTCGGTGCGGCAGCCACA
CCAGCTCAGCCCGCCGGAGGCTTATTCGGGGCAAACACGTCCACGGGATT
TGGAAGCACTGCCACAGCTCAGCCCACGGCTTTTGGAGCCTTCTCGCAGC
CGCAACAGACCTCGAACATATTTGGATCCACCCAGACGGCGGCAAGCACC
TCCCTCTTTGGACAATCGACGCTACCCGCCTTTGGAGCCGCCAAGCCGAC
TATGACGGCCTTTGGGCAAACAGCTGCTGCTCAGCCCACGGGCTCTTTGT
TTGGCCAACCGGCTGCCGCCACCAGTACAACAGGATTCGGAGGCTTTGGG
ACGTCGGCGCCTACAACCACCAATGTTTTTGGCAGTGGCACCGCCTCCGC
CTTTGCCCAACCTCAGGCTACGGCCGTGGGAGCTTCCGGAGTCAATACGG
GCACGGCCGTGGCCAAGTACCAGCCAACCATTGGTACAGATACCCTGATG
AAGAGCGGTCAGGCAAATAGTGTGAACACTAAGCAGCACTGCATCACGGC
TATGAAGGAGTTCGAGGGCAAATCTCTGGAGGAGCTCCGCCTGTAAGACT
ATATGTGCGGGCGCAAGGGTCCACAGGCTGGGAATGCTCCGGGAGCTTTT
TGGATTGGAGCTCAGTTACTCAGCCCGCTCAGCCTGCAAGTGGTGGCCTG
TTTGGAAGCACTGCCCAACCAAGCACAGGTCTGTTTGGCCAAACTGTGAC
CGAGAATAAGAGCATGTTTGGCACCACCGCTTTTGCCAACAACCGGCGAC
TAACAATGCATTCGGAGCCGCAACCCAGCAAAAACAACTTTTCTGCAAAG
CCCTTTGGAGCCACCACCAACAACTCGTTTGCCGCTCCCGCAGCTGACGC
TTCAAATCCATTGGGCGAAGCTGCTTTTTGACAAGGAAGAAGCCCCTTTG
GTCGGAACTGCTTACCATGCTGGATCCTGCTCCGGAAGAACATAAACAGG
A
FMO11934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup98-96-RD | 6412 | CG10198-RD | 246..1344 | 9..1103 | 5120 | 98.3 | Plus |
Nup98-96-RC | 3987 | CG10198-RC | 246..1344 | 9..1103 | 5120 | 98.3 | Plus |
Nup98-96-RA | 6624 | CG10198-RA | 458..1556 | 9..1103 | 5120 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23780006..23780831 | 1103..282 | 3585 | 97 | Minus |
3R | 32079331 | 3R | 23780885..23781164 | 288..9 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:18 has no hits.
FMO11934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:02 Download gff for
FMO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup98-RC | 473..1563 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:17 Download gff for
FMO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup98-96-RA | 450..1540 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:41 Download gff for
FMO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup98-96-RA | 450..1540 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:41 Download gff for
FMO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23780022..23780824 | 289..1087 | 97 | <- | Minus |
3R | 23780885..23781170 | 1..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:17 Download gff for
FMO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19605744..19606546 | 289..1087 | 97 | <- | Minus |
arm_3R | 19606607..19606892 | 1..288 | 98 | | Minus |