Clone FMO11934 Report

Search the DGRC for FMO11934

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:34
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNup98-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11934.5prime Sequence

1151 bp (1038 high quality bases) assembled on 2012-06-21

> FMO11934.5prime
CAGTCGACATGTTTGGCGGCGCGAAACCCAGCTTCGGAGCCACTCCGGCG
GCCACCAGCTTTGGCGGATTCAGCGGCACCACAACAACCACTCCGTTTGG
CCAGTCGGCATTTGGCAAACCCGCCGCACCGGCCTTTGGAAACACCTCCA
CCTTTGCCGCCCAACCCGCGCAGCAGTCACTGTTCGGTGCGGCAGCCACA
CCAGCTCAGCCCGCCGGAGGCTTATTCGGGGCAAACACGTCCACGGGATT
TGGAAGCACTGCCACAGCTCAGCCCACGGCTTTTGGAGCCTTCTCGCAGC
CGCAACAGACCTCGAACATATTTGGATCCACCCAGACGGCGGCAAGCACC
TCCCTCTTTGGACAATCGACGCTACCCGCCTTTGGAGCCGCCAAGCCGAC
TATGACGGCCTTTGGGCAAACAGCTGCTGCTCAGCCCACGGGCTCTTTGT
TTGGCCAACCGGCTGCCGCCACCAGTACAACAGGATTCGGAGGCTTTGGG
ACGTCGGCGCCTACAACCACCAATGTTTTTGGCAGTGGCACCGCCTCCGC
CTTTGCCCAACCTCAGGCTACGGCCGTGGGAGCTTCCGGAGTCAATACGG
GCACGGCCGTGGCCAAGTACCAGCCAACCATTGGTACAGATACCCTGATG
AAGAGCGGTCAGGCAAATAGTGTGAACACTAAGCAGCACTGCATCACGGC
TATGAAGGAGTTCGAGGGCAAATCTCTGGAGGAGCTCCGCCTGTAAGACT
ATATGTGCGGGCGCAAGGGTCCACAGGCTGGGAATGCTCCGGGAGCTTTT
TGGATTGGAGCTCAGTTACTCAGCCCGCTCAGCCTGCAAGTGGTGGCCTG
TTTGGAAGCACTGCCCAACCAAGCACAGGTCTGTTTGGCCAAACTGTGAC
CGAGAATAAGAGCATGTTTGGCACCACCGCTTTTGCCAACAACCGGCGAC
TAACAATGCATTCGGAGCCGCAACCCAGCAAAAACAACTTTTCTGCAAAG
CCCTTTGGAGCCACCACCAACAACTCGTTTGCCGCTCCCGCAGCTGACGC
TTCAAATCCATTGGGCGAAGCTGCTTTTTGACAAGGAAGAAGCCCCTTTG
GTCGGAACTGCTTACCATGCTGGATCCTGCTCCGGAAGAACATAAACAGG
A

FMO11934.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Nup98-96-RD 6412 CG10198-RD 246..1344 9..1103 5120 98.3 Plus
Nup98-96-RC 3987 CG10198-RC 246..1344 9..1103 5120 98.3 Plus
Nup98-96-RA 6624 CG10198-RA 458..1556 9..1103 5120 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23780006..23780831 1103..282 3585 97 Minus
3R 32079331 3R 23780885..23781164 288..9 1400 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:09:18 has no hits.

FMO11934.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:02 Download gff for FMO11934.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup98-RC 473..1563 1..1087 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:17 Download gff for FMO11934.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup98-96-RA 450..1540 1..1087 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:49:41 Download gff for FMO11934.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup98-96-RA 450..1540 1..1087 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:49:41 Download gff for FMO11934.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23780022..23780824 289..1087 97 <- Minus
3R 23780885..23781170 1..288 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:17 Download gff for FMO11934.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19605744..19606546 289..1087 97 <- Minus
arm_3R 19606607..19606892 1..288 98   Minus