FMO11937.5prime Sequence
1029 bp (550 high quality bases) assembled on 2012-06-21
> FMO11937.5prime
CAGTCGACATGTCCGAAGAAATGGAAATTACTCCTATTACCGGAATGGAT
GAAGTGTCCGAAAAAACTGCGGAGAAAGTCTTTGCTCCAATGTTCGAAGC
AGAAATGTCCGAGAAAATGGATATAACTCCTGTTACCGGAATGGATGAAG
TGTCCGAAAAATCTGCGGAGAAAGTCTTTGCTCCAATGTTCGAAGCAGAA
ATGTCCGAGGAAATGGAAATAACTCCTGTTACCGGAATGGATGAAGTGTC
CGAAAATTATGAGGAGAAGGGCATCGCGCCAATATTCAAAGCACATATGT
CCGAGGATACGGAAAATACTCCTGTTACCGGAATGGGAGAAGTGTCTCAA
ACTTATGAGGAGAACGCAATTGCGCCAATGTCTGAAATATGCGCATCAGG
TGACCCAGTATCTCCAATGGATGGAGTAGCCCAGGAAGAGAACACATTTG
CCTCCATCCCAGATGGTATAACCCGACTCAAGGACATTCTTGCTACGCAG
ACATTCCTTGTCCAGAGGAAATGAAACTTGTTGGTTCCCCAGAAATGAAA
TGTCCCAGATTGAATACCCCCGTTTGTTCGAAAAATATCAACAAAAACGA
ACAAAAATATCAACGATCCTTCCGTGAATGAGAATCCACAAATGATCATG
GATACGAGCACTTTTTCCACGAACGATGCTTCCACTACCAATGTCGTCTA
TGTGGAACAGGAGCCAACATCGGTGGTGATGGTGGAGCAACCAAACACAA
TCATCGAGCTGGTGGATTATTATGTGCCACCAGCGTCCTTGAACAACAGG
ACAATCCGCCCGTTTTTCCCCATCCCAGTGCCCATGTACCCCGAATTCCT
CGCCGGGAAACCCCCCGCCCCCAAGCCGGGCGACAAAGGGTTAAGCGTGG
TCCGGAAGCCAAGGTTCCCAAACCCTAAGGCCCGCGAGCCAACCAAGCGT
TCGTCGCCCCGGCCGACGCCTTCCCTCCCACTGCCGCCCGGGTTACCGAA
ACTTACCTTGGTCACACGTTCATTCAATT
FMO11937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14190-RA | 2489 | CG14190-RA | 111..1060 | 9..988 | 4155 | 96.6 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 102..385 | 97..379 | 900 | 88 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 207..481 | 9..283 | 880 | 88 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 102..291 | 193..381 | 400 | 81.1 | Plus |
| CG14190-RA | 2489 | CG14190-RA | 303..483 | 9..189 | 380 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19065414..19066280 | 9..891 | 3705 | 97.3 | Plus |
| X | 23542271 | X | 19065412..19065688 | 103..379 | 890 | 88.1 | Plus |
| X | 23542271 | X | 19065510..19065784 | 9..283 | 880 | 88 | Plus |
| X | 23542271 | X | 19065412..19065594 | 199..381 | 390 | 80.9 | Plus |
| X | 23542271 | X | 19065606..19065786 | 9..189 | 380 | 80.7 | Plus |
Blast to na_te.dros performed 2014-11-28 03:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 1163..1236 | 704..774 | 128 | 67.6 | Plus |
FMO11937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:11 Download gff for
FMO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14190-RA | 1..981 | 9..1028 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:45 Download gff for
FMO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14190-RA | 105..1091 | 1..1028 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:02 Download gff for
FMO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14190-RA | 105..1091 | 1..1028 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:02 Download gff for
FMO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19065408..19066394 | 1..1028 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:45 Download gff for
FMO11937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18959441..18960427 | 1..1028 | 95 | | Plus |
