Clone FMO11938 Report

Search the DGRC for FMO11938

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:119
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptOatp33Ea-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11938.5prime Sequence

263 bp (163 high quality bases) assembled on 2012-06-21

> FMO11938.5prime
CAGTCGACATGGCGGAAGTGAAGCGTCGGGACCCAAACCGCCCGCCCGGA
CACTACTTGTGCGGCATGGCCAACTGGCATCCGCCCTGGCTGCAGAAGTA
CGCCACCACCAAGATGTTCATGGGCGTCTACGGGCTGCTCGGCACCATTC
AGGGCGATGTCCTACATGTACTTCATCGTCCCTCTAACCACGCTGGAAAA
CCCTTTCAAGATTCCCCGCCCAACGAACGGGATTATTCCAAGCCGGAATT
AAAACTCCGCAAA

FMO11938.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Oatp33Ea-RB 3025 CG5427-RB 400..647 9..257 995 93.6 Plus
Oatp33Ea-RA 2939 CG5427-RA 388..635 9..257 995 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12444172..12444388 226..9 950 96.8 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:10 has no hits.

FMO11938.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:12 Download gff for FMO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
Oatp33Ea-RA 378..602 1..226 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:48 Download gff for FMO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
Oatp33Ea-RA 380..604 1..226 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:05 Download gff for FMO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
Oatp33Ea-RA 380..604 1..226 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:05 Download gff for FMO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12444172..12444395 1..226 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:48 Download gff for FMO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12444172..12444395 1..226 95   Minus