FMO11939.5prime Sequence
1155 bp (1022 high quality bases) assembled on 2012-06-21
> FMO11939.5prime
CAGTCGACATGCATGCATCCTCCGCGGCGGCCACTGCACTTGTGGAGTAC
TCGGACGTCAGCTCAGAGGACTTCTCGGATCAGGAGGCAGGGGACTTGGA
TGCGGACGCCGGCAAGGGTGCCGGAAACATCAAAAAACCGAAGCCAGCTC
CGGATAATCAGTTCTCCAAAGGTCGTCTTGATGCCAAGCCCGATAAAGAG
GGTTATGATAACTACAGAAGTAGAAGGGCGGAAGACTCAAGCGACCCAGT
GGCGGCCGGATCGAGGCAAACGTCTAGCAGCGAGGCCACGAATCCGCGGG
AGGAACCTTCGCAGGCATCCAACACCTCGAAGGACGAGCTGTGGGGCAGA
GAGATATACATGTCCAGCGATTCTATCGACACCGATGAGCTGGAGGCGGA
AATGAAGCGGCAGAAGCGCAAAAAGCAGAAAAAGGAAAAACACAAACACA
AGTCGAAGAAAAAGTCCAAGAAGCGCAAGAAGAAGCGGGCCAAGTCATAC
TCCAGCATCGATTCGATGTCAGACAATGACATCAATGCCTTACTGGACCG
GCGCTATACTCCGCCGACGGCTCCTAGCAAGAGCAACGAACGGACGGTTA
GCGCTGCGCCGTCCTCCTTCACCCCACACAACCTCAAGGAGAGCAGTTCG
CCAGCCACTCCACCGCCAGTGCGTCGCCCGAATACGAACAGCAACTACTA
CGGCGAGTCGTCCCTGGAGACGGCCAACTCTGCACTGGGAAGCAACCTGC
AGGTCACAGTTACGAATAAGCAGTCGATCAGCAACCGGCTTCGTTCTCCT
CCTCCGTCCTCCCGCTCCAGCGGCAACGGGCCGAGGTTTGGAAACTCCCC
GCGAACTCCACCGCCCTCTCACTACAGCTCCAGTGGCGGAGGAGGGTTGG
CAGTGGGTCAGTGGTCCGCGATTCACGCAGCTCCCGCTATGTAAATAGTC
CCACAAAGAGGATGTAAGTGCGCATCACCGCTCTAGCACGATCACGGATA
TCAGACGTTACCTCTGGTGCTGGGTCGAGCAGTCCGATACAGAGGTGACG
ACTGTCGCGACCTGACGCTCAACATCGCAGCAGCCACCAAAGCGTCGAGT
TACGATGCCAGGAATGCTCGGACCTGAGCAGTGAACCCCTTCTGAGAGTC
AACGG
FMO11939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk12-RC | 4244 | CG7597-RC | 396..1455 | 9..1058 | 5035 | 98.9 | Plus |
| Cdk12-RA | 4772 | CG7597-RA | 396..1455 | 9..1058 | 5035 | 98.9 | Plus |
| Cdk12-RB | 4530 | CG7597-RB | 682..1741 | 9..1058 | 5035 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21517843..21518666 | 215..1034 | 3860 | 99.3 | Plus |
| 3L | 28110227 | 3L | 21517582..21517790 | 9..217 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:10:14 has no hits.
FMO11939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:13 Download gff for
FMO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7597-RA | 395..1442 | 9..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:50 Download gff for
FMO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk12-RB | 682..1729 | 9..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:06 Download gff for
FMO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk12-RB | 682..1729 | 9..1048 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:06 Download gff for
FMO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21517582..21517790 | 9..217 | 100 | -> | Plus |
| 3L | 21517846..21518666 | 218..1034 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:50 Download gff for
FMO11939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21510682..21510890 | 9..217 | 100 | -> | Plus |
| arm_3L | 21510946..21511766 | 218..1034 | 99 | == | Plus |
