FMO11941.5prime Sequence
1130 bp (1013 high quality bases) assembled on 2012-06-21
> FMO11941.5prime
CAGTCGACATGGATCTAGCAGATCAAATCGATGACTATATTTGTTCGTTC
GAGGGACTTGGTGACTTAACAATGGACTCCCTGGCCATCTTCATTTTCCT
GTGGGCCGTTCTGGCCCTCTTCTCCGTGTGGCTAATCAAGCTGCTCTACC
ACAAGTATCTCAACAAGGACAAGTCGGCCAGTGCGGCCAACAGTCGCCAG
ACGAGCGTGGCCCCCACATCCGGATCACCCACGTCCGTCGCCGGCAAGAC
GGAGAAACGTCTCTCGGAGCCGCGCGATCTTCTGGCCACCAAGAGCAAGG
TGGAAGGCTTGGACTTATCCAAGCCTCTGGCCGGCGCATCCGGTGGTCGA
GGACGTTCATCAGCATCGCCATTGAATACCGCTGGTGCAGCTGCCGGCGG
TCCACGTCGTCGGGTGGTGCGTCAGAGTTCCACTGGGCCAGAGAATCGCA
AGAAGCGCTATGTCCCACCGCCATCAAATGTCGTGGGTCCAGAAACGAGC
TCCGTCACCTGGACCAGCCAAGTGTTTCGCTGGCTTTATAGCGACCTGGT
CATCGTCAACGAGCTGCTCATGTCCTGGGTAATCGCCATCAACGACACGC
TGCGCAAGTCCGTGGAGGAGCATGGAGTGGCCGTTGAAGTGGTTCGAGTG
CTACCCGACAGTCCTGCCCCCGGATTGAATAATATATTTTGTAATTGCGA
TGAAAACAAATCCCGCTGATATGCTCATCACCTTTGACTGCGATGCAATG
CCGGTGCTGCAGGTGAAGACCTTTCCGCCAAAAGTCGGGCAAGGTGGAGA
CCTCCCACTACAAGGTCACCGTGTCTAGGTTCCGCGCCCGTATGGCCATT
CCCATGAACTACAACAGCCTCAGGGTGAGATGCGAGTCGAGGGCTTTCCG
GATGTTCGCATCGCGATGAACAGCGTGGTTGCCATCAAGGCAATGGATCA
GGATGAACAGCAATGCAGACGGTGATCAACGACATCCTGACGAACGGCTT
TGTCCGACACCATCTATTCCGGTGACTCTTCCCATTATATCCCACTGTCA
GGGCCCGAGGTGGTAGACCTCTGCACTTGCCCCAACATGGAACACACATG
GGTGGGGAGGAATTGAGGAATCCCAACCAT
FMO11941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RN | 3107 | CG10737-RN | 240..1349 | 9..1118 | 4810 | 96.2 | Plus |
| CG10737-RO | 3430 | CG10737-RO | 240..1349 | 9..1118 | 4810 | 96.2 | Plus |
| CG10737-RS | 3953 | CG10737-RS | 985..2094 | 9..1118 | 4810 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19170673..19171161 | 9..497 | 2370 | 99 | Plus |
| 2R | 25286936 | 2R | 19172344..19172526 | 723..905 | 790 | 97.8 | Plus |
| 2R | 25286936 | 2R | 19171252..19171375 | 497..620 | 605 | 99.2 | Plus |
| 2R | 25286936 | 2R | 19172177..19172280 | 619..723 | 475 | 99 | Plus |
| 2R | 25286936 | 2R | 19172712..19172825 | 904..1017 | 415 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:10:21 has no hits.
FMO11941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:14 Download gff for
FMO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RA | 450..1475 | 9..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:55 Download gff for
FMO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RS | 985..2010 | 9..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:09 Download gff for
FMO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RS | 985..2010 | 9..1036 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:09 Download gff for
FMO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19171253..19171375 | 498..620 | 99 | -> | Plus |
| 2R | 19172179..19172280 | 621..723 | 99 | -> | Plus |
| 2R | 19172345..19172524 | 724..903 | 97 | -> | Plus |
| 2R | 19172712..19172843 | 904..1036 | 91 | | Plus |
| 2R | 19170673..19171161 | 9..497 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:55 Download gff for
FMO11941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15059684..15059785 | 621..723 | 99 | -> | Plus |
| arm_2R | 15058178..15058666 | 9..497 | 98 | -> | Plus |
| arm_2R | 15058758..15058880 | 498..620 | 99 | -> | Plus |
| arm_2R | 15059850..15060029 | 724..903 | 97 | -> | Plus |
| arm_2R | 15060217..15060348 | 904..1036 | 91 | | Plus |
