FMO11942.5prime Sequence
1201 bp (1047 high quality bases) assembled on 2012-06-21
> FMO11942.5prime
CAGTCGACATGGATAGCGAGATACAAGGATTCTTTAAGAACAAGACCGTG
TTCCTTACGGGTGGCACCGGATTTCTGGGAAAAGTGATCATTGAGAAACT
ACTGAGGACCACGGAAGTCAATCGGATTTACTCCTTAATTAGACCTAAGC
GGGGAGTGCCTATCGAGGACCGAATCACAACCTGGGCAAAGGATCCGGTG
TTTGAGGTGCTCCTAAGGACGAAGCCAGATGCCTTGCAGCGAGTTTGTCC
CATCGCGGGCGACTGCTTGGATCCGGATCTGGGTATAAGCCAATCGGATC
AAAGGATCCTGACCGCCGAGGTGCAGATTGTAATCCATGGAGCTGCAACC
GTGCGATTCGACGAGGCTTTACACATCTCCTTGGCCATCAATGTACGAGC
CACTCGTCTGATGCTTCAACTGGCCAAGCAGATGACCCAGCTGGTGTCCT
TCGTTCACGTATCCACTGCCTACTCCAACTGCGTGGTGCATGACATCGCA
GAGCGATTCTATCCGGAGCACTTGAACTGCAGTTCGGATAAGATCCTAGC
CGTGGGTGAACTGGTAAGCAATAAATTACTGGACGCGATGGAACCTAGCC
TTGTTGGCTCCTTCCCCAACACGTACACCTACACCAAAGCCCTGGCCGAG
GATGTGATCCTGCGGGAGGCGGGCAACCTGCCACTGTCCATCTTCCGACC
GGCGATCATAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACA
ACCTATTCGGACCACTGGCCCTCTGCTTCGGCGGAGCTCGCGGTATAATG
CGGGTCACCACGGTGGACCCTTCAGCCAAGATCAGCCTAGTTCCCGCTGA
CTACTGCGTAAATGTGGCATTGGCTTGCGCTTGGAGAACGGCGGAGATAT
CCGTACAGAATGGAAAGGTCACGACGCCCCCATTTACGCGTTTGCACCTA
GCGAGAATAACCTGATGAGCTACGGAAACTTTTATCAAATCATCTTTTTT
TCTATCGGGACATCATACCGCTAACCAGATGCTGGTGTATCCCTTTCGTC
TGTGCATCTTCCACCACATCCCTATTTCGGCTTGACGCTTCTTCTTACAC
ACCCTTTCCCGGCTACTTTCTTCGATTCTGCTGCTGCCCCCTCAGGACCG
GAAAGCCATGTACTCATGATCTTGTTATCGAAGATCCAAAGACACACTCG
C
FMO11942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17560-RA | 1712 | CG17560-RA | 32..1173 | 9..1153 | 5290 | 98.1 | Plus |
| CG17562-RA | 1674 | CG17562-RA | 101..795 | 9..703 | 745 | 74.4 | Plus |
| CG10097-RC | 4716 | CG10097-RC | 3294..3525 | 318..549 | 305 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16618276..16618787 | 197..708 | 2560 | 100 | Plus |
| 3R | 32079331 | 3R | 16618843..16619251 | 709..1118 | 1550 | 95.6 | Plus |
| 3R | 32079331 | 3R | 16618105..16618222 | 83..200 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 16615697..16616159 | 241..703 | 575 | 74.9 | Plus |
| 3R | 32079331 | 3R | 16617981..16618056 | 9..84 | 380 | 100 | Plus |
| 3R | 32079331 | 3R | 12392007..12392238 | 549..318 | 305 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:26 has no hits.
FMO11942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:15 Download gff for
FMO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17560-RA | 32..1176 | 9..1157 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:57 Download gff for
FMO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17560-RA | 32..1176 | 9..1157 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:10 Download gff for
FMO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17560-RA | 32..1176 | 9..1157 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:10 Download gff for
FMO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16617981..16618056 | 9..84 | 100 | -> | Plus |
| 3R | 16618107..16618219 | 85..197 | 100 | -> | Plus |
| 3R | 16618277..16618787 | 198..708 | 100 | -> | Plus |
| 3R | 16618843..16619287 | 709..1157 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:57 Download gff for
FMO11942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12443703..12443778 | 9..84 | 100 | -> | Plus |
| arm_3R | 12443829..12443941 | 85..197 | 100 | -> | Plus |
| arm_3R | 12443999..12444509 | 198..708 | 100 | -> | Plus |
| arm_3R | 12444565..12445009 | 709..1157 | 94 | | Plus |
