FMO11943.5prime Sequence
1122 bp (1008 high quality bases) assembled on 2012-06-21
> FMO11943.5prime
CAGTCGACATGTCCTGTTGCGGCCAAATCACCAGTATACGAGTGCCCATC
GAGCTAAGCAATCAGAGCGATGTGCTCAAGGGTCCAGAACAAATACACGT
CTCCAAGTTCTACAAGGAGTCGAAGAACGGCAAGTTCGTGTCCTACATCA
CAGAGAATGTCCGCACCCTGTACCAGACGTTCCGCGAGGGCGCCTACGCC
TCCAACAATGGACCATGTCTTGGCTGGCGCGAGACCCTGACCTCCCCCTA
CCAGTGGATCAACTACGACGAGGCCCTGCTGCGTGCCAAGAACTTTGGAG
CCGGAATGCTGGCGCTAGGAGCCAGGCCAAAGCAGTTGATTGGGATCTAC
TCGCAGAACCGCCCGGAATGGATCCTGTACGAGCAGGGCTGCTACTCCTT
CTCCTTGGTGGTGGTGCCGCTGTACGACACCCTGGGCCCCGATGCCTGCG
CCTTCATCATACGCCAGACGGATATGCAGGTGGTGATTGTGGAGGACGAT
GGCAAGGCGGCCATGCTGTTGGAGAAGGCGCCGCGCAGTCTGAAGATCAT
AGTGGCTATCAAGCCCATCCGGCAGACGACCCTGGAGCGGGCACGCAGCC
GAGGCATACAGATATTCTCATTTATCGATGTGGAGAAACTAGGTGCCAAA
GGCAACCATCCGGAGGTGCCGCCGACGGCGGAGGATCTTTGCACGGTGTG
CTACACGTCCGGGACGACGGGCAATCCGAAGGGCGTGATGCTCACCCACG
GCAACGTGGTGGCCGGCGTCTGTTCTGTGATCCTGCAGATGGGCGACCAT
CGCATCCGGGCGGGCGATGTGATGGTGTCATTCCTGCCCTGGCCCACATG
TTCGAGCGTTGCTGCGAGAATGGAATGTACTATGTGGGCGGCTGTGTGGG
CTTCTATTCCGGCGACATCAAGGAATTAACCCAATGACTCAAGATGCTGA
AACCAACCGTAATGCCGGCAGTGCCTCGTCTTTTGAACGCGTCTTACGAC
AAGATTCAAATTGATTTTCTCACCGTCTGGACCTGAAGAGGGTCTCCTCC
ATATGCCATGCGATCGAAAGAGAAGGAATCGCCGAGGTGTTCTCGGCGAG
AAAACGCTCTTGGGCACACGAT
FMO11943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-RD | 2649 | CG3961-RD | 250..1327 | 8..1083 | 5025 | 98.2 | Plus |
| CG3961-RC | 3309 | CG3961-RC | 578..1584 | 79..1083 | 4670 | 98.1 | Plus |
| CG3961-RA | 3373 | CG3961-RA | 642..1648 | 79..1083 | 4670 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18880156..18880981 | 1077..253 | 3595 | 96.5 | Minus |
| 3L | 28110227 | 3L | 18881078..18881253 | 254..79 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 18882318..18882391 | 81..8 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:29 has no hits.
FMO11943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-21 10:23:16 Download gff for
FMO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RD | 250..1274 | 8..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:59 Download gff for
FMO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RD | 250..1274 | 8..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:50:12 Download gff for
FMO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RD | 250..1274 | 8..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:50:12 Download gff for
FMO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18880202..18880979 | 255..1032 | 98 | <- | Minus |
| 3L | 18881078..18881251 | 81..254 | 100 | <- | Minus |
| 3L | 18882319..18882391 | 8..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:59 Download gff for
FMO11943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18873302..18874079 | 255..1032 | 98 | <- | Minus |
| arm_3L | 18874178..18874351 | 81..254 | 100 | <- | Minus |
| arm_3L | 18875419..18875491 | 8..80 | 100 | | Minus |
